Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36676 Sapria himalayana HOM05D003322 ORTHO05D365009 2.5e-43 178.3 88 100.0
SHI37440 Sapria himalayana HOM05D003322 ORTHO05D370980 1.4e-12 76.3 41 85.4
SHI19617 Sapria himalayana HOM05D047757 ORTHO05D363895 1.2e-08 63.2 42 71.4
SHI27070 Sapria himalayana HOM05D003322 ORTHO05D004228 7.7e-08 60.5 42 71.4
TAR374G0254 Trochodendron aralioides HOM05D003322 ORTHO05D004228 1.0e-07 60.1 41 68.3
Gohir.D06G107050 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.3e-07 59.7 47 63.8
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.0e-07 57.8 55 56.4
EL10Ac5g11127 Beta vulgaris HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
CDE02G3519 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
ClCG04G011820 Citrullus lanatus HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Cc03_g13130 Coffea canephora HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Gorai.004G104400 Gossypium raimondii HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
HanXRQChr09g0248401 Helianthus annuus HOM05D003322 ORTHO05D004228 8.5e-07 57.0 42 66.7
HanXRQChr09g0248501 Helianthus annuus HOM05D003322 ORTHO05D004228 8.5e-07 57.0 42 66.7
HanXRQChr09g0248941 Helianthus annuus HOM05D003322 ORTHO05D004228 8.5e-07 57.0 42 66.7
Manes.06G084900 Manihot esculenta HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Manes.14G085400 Manihot esculenta HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Nn8g40879 Nelumbo nucifera HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
PSO017G5003 Papaver somniferum HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 65.9
PSO478G0061 Papaver somniferum HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 65.9
Prupe.5G204800 Prunus persica HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Hund09909 Selenicereus undatus HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Sc12g0006660 Simmondsia chinensis HOM05D003322 ORTHO05D004228 8.5e-07 57.0 41 68.3
Atru.chr9.581 Acer truncatum HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 65.9
MSTRG.22966 Avicennia marina HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
AUR62021565 Chenopodium quinoa HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
Ciclev10021169m.g Citrus clementina HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
DCAR_002146 Daucus carota HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
DCAR_023345 Daucus carota HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
Gohir.A03G070000 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 65.9
Gohir.D03G096600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 65.9
Gorai.003G101200 Gossypium raimondii HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 65.9
Lj5A435G20 Lonicera japonica HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
MBI11_g00916_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
MD06G1202600 Malus domestica HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
MD14G1211800 Malus domestica HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
Phvul.009G191400 Phaseolus vulgaris HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
QL10p019459 Quercus lobata HOM05D003322 ORTHO05D004228 1.1e-06 56.6 41 68.3
QL10p019482 Quercus lobata HOM05D003322 ORTHO05D000004 1.1e-06 56.6 41 68.3
CANSAT80G2201 Cannabis sativa HOM05D003322 ORTHO05D004228 1.4e-06 56.2 41 65.9
AUR62008524 Chenopodium quinoa HOM05D003322 ORTHO05D004228 1.4e-06 56.2 41 68.3
FAN08G0721 Fragaria x ananassa HOM05D003322 ORTHO05D004228 1.4e-06 56.2 41 68.3
FAN13G2646 Fragaria x ananassa HOM05D003322 ORTHO05D004228 1.4e-06 56.2 41 68.3
Ah.11g047800 Amaranthus hybridus HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
Cpa.g.sc25.176 Carica papaya HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
CiPaw.11G053100 Carya illinoinensis HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
CiPaw.11G053200 Carya illinoinensis HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
CDE05G1000 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
MELO3C002027.2 Cucumis melo HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
CsaV3_1G005960 Cucumis sativus L. HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
FvH4_5g13860 Fragaria vesca HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 68.3
Peaxi162Scf00702g00035 Petunia axillaris HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
PGR083G0152 Punica granatum HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
Rhsim08G0146100 Rhododendron simsii HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
RcHm_v2.0_Chr7g0183071 Rosa chinensis HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 68.3
Sed0007546 Sechium edule HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
Sc10g0009720 Simmondsia chinensis HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
SGA_v2.0_scaffold25G10961 Striga asiatica HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
unitig_46.g18457 Utricularia gibba HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
GSVIVG01007868001 Vitis vinifera HOM05D003322 ORTHO05D004228 1.9e-06 55.8 41 65.9
CSS0041329 Camellia sinensis var. sinensis HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
COL.COLO4_06862 Corchorus olitorius HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Haze_07721 Corylus avellana HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Haze_07723 Corylus avellana HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Duzib068G1237 Durio zibethinus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Duzib205G0199 Durio zibethinus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
ECA233G0034 Erigeron canadensis HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Migut.D01664 Erythranthe guttata HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Glyma.04G162800 Glycine max HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Glyma.06G203200 Glycine max HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Gohir.A07G068700 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Gohir.A12G182500 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Gohir.D07G073200 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Gohir.D12G185600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Gorai.001G077400 Gossypium raimondii HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Gorai.008G199000 Gossypium raimondii HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
HanXRQChr12g0374611 Helianthus annuus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
HanXRQChr12g0374621 Helianthus annuus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Hma1.2p1_0060F.1_g033120 Hydrangea macrophylla HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Lsat_1_v5_gn_8_121700 Lactuca sativa HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Lj1g0009894 Lotus japonicus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Lalb_Chr08g0246391 Lupinus albus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Lalb_Chr11g0061621 Lupinus albus HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
MBI13_g34044_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Medtr4g129790 Medicago truncatula HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Oeu014404.1 Olea europaea HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Oeu061163.1 Olea europaea HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Peaxi162Scf00013g00630 Petunia axillaris HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Peaxi162Scf00201g00237 Petunia axillaris HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Psat0s2642g0080 Pisum sativum HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
SGA_v2.0_scaffold28G11757 Striga asiatica HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
Thecc.03G101400 Theobroma cacao HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
TPR.G24877 Trifolium pratense HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
TWI60G0212 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
VMungo1309G2770 Vigna mungo HOM05D003322 ORTHO05D004228 2.5e-06 55.5 41 65.9
arahy.Tifrunner.gnm1.ann1.0NDH2Q Arachis hypogaea HOM05D003322 ORTHO05D004228 3.2e-06 55.1 41 65.9
arahy.Tifrunner.gnm1.ann1.54SFA6 Arachis hypogaea HOM05D003322 ORTHO05D004228 3.2e-06 55.1 41 65.9
Dinv33826 Davidia involucrata HOM05D003322 ORTHO05D004228 3.2e-06 55.1 47 59.6
Duzib084G1273 Durio zibethinus HOM05D003322 ORTHO05D004228 3.2e-06 55.1 48 56.2
Nitab4.5_0001485g0170 Nicotiana tabacum HOM05D003322 ORTHO05D004228 3.2e-06 55.1 41 65.9
Potri.015G057700 Populus trichocarpa HOM05D003322 ORTHO05D004228 3.2e-06 55.1 41 63.4
Sabra15G0083800 Salix brachista HOM05D003322 ORTHO05D004228 3.2e-06 55.1 41 63.4
SalBow5G1734 Salvia bowleyana HOM05D003322 ORTHO05D004228 3.2e-06 55.1 41 65.9
Aa31LG5G4180 Aethionema arabicum HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
AL4G28590 Arabidopsis lyrata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
AT2G33040 Arabidopsis thaliana HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaB01g01791 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaB01g03961 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaB02g10520 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaB06g28649 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaC01g05883 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaC02g07863 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BcaC02g11376 Brassica carinata HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
A03p18380 Brassica napus HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
A04p25420 Brassica napus HOM05D000074 ORTHO05D000696 4.2e-06 54.7 41 65.9
A05p12580 Brassica napus HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
C03p21450 Brassica napus HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
C04p16450 Brassica napus HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
C04p62560 Brassica napus HOM05D000074 ORTHO05D000696 4.2e-06 54.7 41 65.9
BolC3t14530H Brassica oleracea HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BolC4t23195H Brassica oleracea HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BolC4t27737H Brassica oleracea HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BraA03t11101Z Brassica rapa HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BraA04t18045Z Brassica rapa HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
BraA05t20195Z Brassica rapa HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
Carub.0004s1452 Capsella rubella HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
CARHR126980 Cardamine hirsuta HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
Thhalv10016929m.g Eutrema salsugineum HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
Sp4g15380 Schrenkiella parvula HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
TWI81G0037 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 4.2e-06 54.7 41 65.9
Dinv17411 Davidia involucrata HOM05D003322 ORTHO05D004228 5.5e-06 54.3 42 61.9
Eucgr.B00589 Eucalyptus grandis HOM05D003322 ORTHO05D004228 5.5e-06 54.3 41 65.9
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 7.2e-06 53.9 39 69.2
HPP92_009478 Vanilla planifolia HOM05D003322 ORTHO05D004228 7.2e-06 53.9 41 65.9
Aqoxy6G00786 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 9.4e-06 53.5 41 63.4
Aqoxy6G02351 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 9.4e-06 53.5 41 63.4
Haze_14434 Corylus avellana HOM05D003322 ORTHO05D004228 9.4e-06 53.5 41 63.4
FAN18G2096 Fragaria x ananassa HOM05D003322 ORTHO05D004228 9.4e-06 53.5 39 69.2
SEGI_19317 Sequoiadendron giganteum HOM05D003322 ORTHO05D004228 9.4e-06 53.5 46 58.7
THA.LOC104801002 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 9.4e-06 53.5 41 63.4


User provided reference genes

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