Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 4.0e-56 221.1 103 100.0
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-41 172.9 97 84.5
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-28 127.9 98 67.3
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-17 92.4 58 81.0
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 6.6e-11 70.9 46 76.1
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 5.6e-10 67.8 54 64.8
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 5.6e-10 67.8 54 64.8
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 7.3e-10 67.4 54 64.8
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 9.6e-10 67.0 54 63.0
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 9.6e-10 67.0 54 63.0
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.1e-09 65.9 54 64.8
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 2.8e-09 65.5 54 63.0
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.8e-09 65.5 54 63.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.8e-09 65.5 54 63.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.8e-09 65.5 54 63.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.8e-09 64.7 54 63.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 6.2e-09 64.3 54 63.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 6.2e-09 64.3 54 63.0
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 8.1e-09 63.9 54 63.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 8.1e-09 63.9 54 63.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 1.1e-08 63.5 54 64.8
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.1e-08 63.5 54 63.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.1e-08 63.5 54 63.0
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.4e-08 63.2 54 61.1
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.4e-08 63.2 54 64.8
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.8e-08 62.8 54 61.1
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.8e-08 62.8 54 61.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.8e-08 62.8 54 61.1
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.8e-08 62.8 54 61.1
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.8e-08 62.8 54 61.1
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.8e-08 62.8 54 61.1
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 2.4e-08 62.4 54 63.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.4e-08 62.4 54 61.1
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.4e-08 62.4 54 61.1
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.4e-08 62.4 54 61.1
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 3.1e-08 62.0 54 63.0
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.1e-08 62.0 54 61.1
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 4.0e-08 61.6 54 63.0
SHI38762 Sapria himalayana HOM05D023003 ORTHO05D005597 4.0e-08 61.6 49 63.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 4.0e-08 61.6 54 59.3
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 4.0e-08 61.6 53 58.5
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 63.0
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 55.6
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 61.1
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 59.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 63.0
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 61.1
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 63.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 61.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 61.1
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 5.3e-08 61.2 54 61.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 6.9e-08 60.8 54 59.3
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 9.0e-08 60.5 54 57.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 9.0e-08 60.5 54 59.3
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 9.0e-08 60.5 54 59.3
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 9.0e-08 60.5 54 55.6
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 9.0e-08 60.5 53 60.4
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.2e-07 60.1 54 61.1
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.5e-07 59.7 54 61.1
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.5e-07 59.7 54 59.3
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 1.5e-07 59.7 54 61.1
SHI37143 Sapria himalayana HOM05D000024 ORTHO05D000006 1.5e-07 59.7 37 78.4
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.5e-07 59.7 54 61.1
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.5e-07 59.7 54 63.0
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.0e-07 59.3 54 53.7
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.0e-07 59.3 54 59.3
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.0e-07 59.3 54 59.3
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 2.0e-07 59.3 54 59.3
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 2.0e-07 59.3 54 59.3
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.0e-07 59.3 54 61.1
SHI37442 Sapria himalayana HOM05D023003 ORTHO05D005597 2.0e-07 59.3 42 69.0
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 2.6e-07 58.9 54 59.3
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.4e-07 58.5 54 57.4
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 3.4e-07 58.5 54 59.3
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.4e-07 58.5 54 61.1
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 3.4e-07 58.5 54 61.1
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 4.5e-07 58.2 54 57.4
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 5.8e-07 57.8 54 51.9
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 5.8e-07 57.8 51 58.8
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 7.6e-07 57.4 36 80.6
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 9.9e-07 57.0 54 51.9
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 9.9e-07 57.0 54 59.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 9.9e-07 57.0 54 59.3
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 9.9e-07 57.0 54 59.3
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.3e-06 56.6 54 57.4
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.3e-06 56.6 56 57.1
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.3e-06 56.6 54 55.6
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.3e-06 56.6 54 57.4
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.7e-06 56.2 54 51.9
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.2e-06 55.8 54 57.4
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 2.2e-06 55.8 56 55.4
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.2e-06 55.8 54 55.6
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.2e-06 55.8 54 55.6
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.2e-06 55.8 54 55.6
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 2.2e-06 55.8 34 76.5
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.9e-06 55.5 54 51.9
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.9e-06 55.5 61 50.8
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 6.4e-06 54.3 54 53.7
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 6.4e-06 54.3 48 58.3
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 8.4e-06 53.9 54 51.9


User provided reference genes

Program Settings