Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 5.8e-250 867.1 431 100.0
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 6.7e-89 332.0 206 85.0
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 6.7e-89 332.0 206 85.0
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.1e-86 322.8 195 87.2
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 9.7e-80 301.6 249 68.3
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 6.9e-78 295.4 161 90.1
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 6.9e-78 295.4 161 90.1
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 6.9e-78 295.4 161 90.1
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 6.9e-78 295.4 161 90.1
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 6.9e-78 295.4 161 90.1
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 6.9e-78 295.4 161 90.1
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.1e-78 295.0 179 87.2
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.0e-77 293.9 261 64.8
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 9.4e-75 285.0 206 75.7
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 9.4e-75 285.0 206 75.7
SHI49523 Sapria himalayana HOM05D014900 ORTHO05D020265 7.9e-74 282.0 143 96.5
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.9e-73 279.6 167 88.0
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.1e-72 278.1 209 74.2
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 1.5e-72 277.7 200 76.5
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 1.4e-70 271.2 267 61.0
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-69 267.7 182 78.6
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 1.5e-67 261.2 206 69.9
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 8.8e-65 251.9 171 80.1
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 1.4e-62 244.6 156 80.8
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 9.1e-62 241.9 206 67.0
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.6e-61 241.1 254 58.7
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.9e-59 234.2 138 88.4
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 3.2e-59 233.4 146 83.6
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 9.4e-59 231.9 137 88.3
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 9.4e-59 231.9 137 88.3
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.6e-58 231.1 138 87.7
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 8.0e-58 228.8 138 86.2
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 7.5e-56 222.2 163 74.2
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.4e-54 218.0 141 83.7
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 2.0e-53 214.2 266 51.9
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.9e-51 207.6 238 54.6
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.1e-50 202.6 230 54.3
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 1.1e-46 191.8 177 63.3
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.8e-46 191.0 135 77.0
SHI36890 Sapria himalayana HOM05D000963 ORTHO05D005131 2.4e-46 190.7 129 76.0
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 2.7e-45 187.2 141 74.5
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 1.7e-44 184.5 193 58.5
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 9.5e-43 178.7 278 45.3
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 4.7e-42 176.4 174 61.5
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 4.7e-42 176.4 176 58.0
Lsat_1_v5_gn_9_35301 Lactuca sativa HOM05D000963 ORTHO05D005131 1.4e-41 174.9 172 55.2
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 8.9e-41 172.2 107 84.1
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 8.9e-41 172.2 96 91.7
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 2.0e-40 171.0 95 91.6
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 2.0e-40 171.0 95 91.6
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.6e-40 170.6 277 44.0
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.3e-39 168.3 94 91.5
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 2.9e-39 167.2 96 86.5
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 6.3e-39 166.0 115 79.1
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 1.1e-38 165.2 120 73.3
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.1e-38 165.2 106 82.1
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 2.4e-38 164.1 94 89.4
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 5.9e-37 159.5 95 87.4
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.3e-36 157.5 114 76.3
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 1.5e-35 154.8 82 92.7
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 6.2e-34 149.4 214 47.2
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.1e-33 147.1 101 76.2
arahy.Tifrunner.gnm1.ann1.LWFR1C Arachis hypogaea HOM05D000963 ORTHO05D005131 5.8e-32 142.9 103 72.8
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 7.5e-32 142.5 95 77.9
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 9.8e-32 142.1 130 63.8
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.4e-30 137.5 95 75.8
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 2.0e-29 134.4 73 93.2
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 2.0e-29 134.4 126 60.3
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.6e-29 133.3 73 91.8
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 6.0e-29 132.9 211 44.1
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.1e-26 124.4 73 86.3
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 3.6e-26 123.6 90 75.6
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.7e-26 123.2 267 37.1
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 6.2e-26 122.9 93 69.9
arahy.Tifrunner.gnm1.ann1.SH46T5 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.4e-25 121.7 96 66.7
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-25 121.3 67 88.1
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.3e-25 120.9 211 43.6
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 5.2e-25 119.8 133 59.4
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.2e-24 118.6 83 75.9
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.4e-24 116.7 73 83.6
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 2.9e-23 114.0 58 94.8
MBI08_g48228_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.9e-22 111.3 90 66.7
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 5.4e-22 109.8 75 74.7
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 1.2e-21 108.6 87 67.8
Migut.E00963 Erythranthe guttata HOM05D000963 ORTHO05D005131 1.6e-21 108.2 64 78.1
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 2.1e-21 107.8 96 66.7
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 2.7e-21 107.5 78 74.4
Hma1.2p1_0045F.1_g026530 Hydrangea macrophylla HOM05D000963 ORTHO05D005131 7.8e-21 105.9 78 74.4
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 1.3e-20 105.1 68 77.9
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.1e-20 103.2 68 76.5
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.5e-19 101.7 211 40.8
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.5e-19 100.9 79 69.6
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 3.3e-19 100.5 56 85.7
arahy.Tifrunner.gnm1.ann1.J9XL5M Arachis hypogaea HOM05D000963 ORTHO05D005131 4.3e-19 100.1 52 92.3
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.5e-19 99.0 74 66.2
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.2e-18 98.6 74 66.2
HPP92_028387 Vanilla planifolia HOM05D000963 ORTHO05D005131 1.6e-18 98.2 70 72.9
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 2.1e-18 97.8 54 83.3
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 4.7e-18 96.7 161 42.9
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.8e-17 94.7 104 53.8
Lsat_1_v5_gn_2_20580 Lactuca sativa HOM05D014900 ORTHO05D020265 2.3e-17 94.4 181 41.4
Lsat_1_v5_gn_8_97340 Lactuca sativa HOM05D014900 ORTHO05D020265 2.3e-17 94.4 181 41.4
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.2e-17 93.2 79 65.8
Lsat_1_v5_gn_4_99780 Lactuca sativa HOM05D000103 ORTHO05D000049 5.2e-17 93.2 49 87.8
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 5.2e-17 93.2 54 85.2
Sopen10g016560 Solanum pennellii HOM05D000963 ORTHO05D005131 5.2e-17 93.2 119 46.2
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 2.0e-16 91.3 51 88.2
arahy.Tifrunner.gnm1.ann1.JE53Y0 Arachis hypogaea HOM05D000963 ORTHO05D005131 4.4e-16 90.1 48 89.6
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 5.8e-16 89.7 154 42.9
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 8.4e-15 85.9 83 57.8
BraSC59t46511Z Brassica rapa HOM05D000963 ORTHO05D005131 1.4e-14 85.1 44 88.6
arahy.Tifrunner.gnm1.ann1.BMCQ1I Arachis hypogaea HOM05D000963 ORTHO05D005131 2.4e-14 84.3 48 79.2
arahy.Tifrunner.gnm1.ann1.D10MHU Arachis hypogaea HOM05D000963 ORTHO05D005131 2.4e-14 84.3 44 93.2
Migut.D01497 Erythranthe guttata HOM05D000963 ORTHO05D005131 4.1e-14 83.6 125 48.8
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.5e-13 80.5 44 88.6
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.5e-13 80.5 44 88.6
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.6e-13 80.1 83 54.2
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 6.0e-13 79.7 57 66.7
EL10As15g24101 Beta vulgaris HOM05D014900 ORTHO05D018510 1.3e-12 78.6 70 57.1
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 1.7e-12 78.2 68 61.8
Gorai.002G201900 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.3e-12 77.8 44 79.5
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 6.6e-12 76.3 79 58.2
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 6.6e-12 76.3 51 74.5
Gohir.D01G162740 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-11 75.1 44 77.3
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.2e-10 72.0 116 43.1
Sopen10g017030 Solanum pennellii HOM05D042347 ORTHO05D014730 1.2e-10 72.0 53 62.3
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 1.6e-10 71.6 36 91.7
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.6e-10 71.6 81 55.6
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 2.1e-10 71.2 91 49.5
Nitab4.5_0004533g0070 Nicotiana tabacum HOM05D014900 ORTHO05D020265 3.6e-10 70.5 63 54.0
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 1.8e-09 68.2 36 88.9
Gorai.003G182700 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.4e-09 67.8 43 72.1
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 5.2e-09 66.6 43 79.1
BraSC138t45524Z Brassica rapa HOM05D000963 ORTHO05D005131 6.8e-09 66.2 36 83.3
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 6.8e-09 66.2 124 40.3
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 2.6e-08 64.3 73 53.4
Nitab4.5_0004533g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.6e-08 64.3 40 77.5
TPR.G33662 Trifolium pratense HOM05D004957 ORTHO05D006741 3.4e-08 63.9 35 82.9
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-07 61.6 49 71.4
Gorai.007G252600 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.2e-07 61.2 33 84.8
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 4.9e-07 60.1 52 61.5
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.4e-06 58.5 40 67.5
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 1.4e-06 58.5 178 35.4
Gorai.009G264200 Gossypium raimondii HOM05D058108 ORTHO05D048204 1.9e-06 58.2 31 77.4
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 3.2e-06 57.4 106 44.3
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 3.2e-06 57.4 55 56.4
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 4.2e-06 57.0 56 58.9
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 5.4e-06 56.6 65 52.3
SGA_v2.0_scaffold43G16403 Striga asiatica HOM05D000457 ORTHO05D000560 7.1e-06 56.2 32 84.4
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 9.3e-06 55.8 48 62.5
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 9.3e-06 55.8 48 62.5
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 9.3e-06 55.8 42 61.9


User provided reference genes

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