Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 2.8e-35 151.4 74 100.0
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-30 136.0 73 91.8
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 7.8e-30 133.3 73 87.7
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.4e-25 117.9 118 56.8
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 4.0e-18 94.4 73 68.5
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 5.8e-17 90.5 73 68.5
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-16 89.4 68 72.1
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 5.8e-09 63.9 103 41.7
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 5.8e-09 63.9 45 73.3
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 7.6e-09 63.5 100 44.0
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.3e-08 62.8 100 39.0
SHI37441 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-08 62.4 35 85.7
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.9e-08 61.6 100 43.0
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.9e-08 61.6 100 43.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 4.9e-08 60.8 100 42.0
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.9e-08 60.8 100 43.0
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 6.5e-08 60.5 100 42.0
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 8.4e-08 60.1 100 39.0
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 8.4e-08 60.1 100 39.0
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.4e-08 60.1 103 38.8
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 8.4e-08 60.1 103 38.8
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.1e-07 59.7 100 42.0
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.1e-07 59.7 100 42.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.1e-07 59.7 103 38.8
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.4e-07 59.3 100 39.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.9e-07 58.9 103 37.9
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.9e-07 58.9 100 41.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.9e-07 58.9 103 37.9
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.9e-07 58.9 103 37.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 1.9e-07 58.9 103 37.9
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.5e-07 58.5 103 37.9
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 3.2e-07 58.2 100 40.0
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 3.2e-07 58.2 100 39.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 4.2e-07 57.8 100 40.0
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 4.2e-07 57.8 100 41.0
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 7.1e-07 57.0 99 40.4
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 7.1e-07 57.0 100 40.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.1e-07 57.0 100 41.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 7.1e-07 57.0 100 41.0
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 7.1e-07 57.0 100 39.0
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 9.3e-07 56.6 100 39.0
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 9.3e-07 56.6 100 40.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 9.3e-07 56.6 103 37.9
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.2e-06 56.2 100 39.0
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.2e-06 56.2 100 37.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.2e-06 56.2 100 38.0
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.1e-06 55.5 100 39.0
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.7e-06 55.1 100 35.0
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.7e-06 55.1 103 36.9
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 2.7e-06 55.1 103 36.9
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.7e-06 55.1 100 39.0
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.5e-06 54.7 100 39.0
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 3.5e-06 54.7 100 39.0
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.6e-06 54.3 100 39.0
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 4.6e-06 54.3 99 37.4
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 4.6e-06 54.3 103 35.9
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 4.6e-06 54.3 99 37.4
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 4.6e-06 54.3 101 37.6
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 4.6e-06 54.3 100 38.0
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 4.6e-06 54.3 100 38.0
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 4.6e-06 54.3 100 39.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 6.0e-06 53.9 100 40.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 6.0e-06 53.9 100 40.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 6.0e-06 53.9 100 40.0
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 6.0e-06 53.9 103 35.9


User provided reference genes

Program Settings