Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI35365 Sapria himalayana HOM05D000849 ORTHO05D003989 8.9e-116 420.6 267 100.0
Manes.03G029400 Manihot esculenta HOM05D000849 ORTHO05D003989 5.3e-20 102.4 114 50.0
TAR636G1139 Trochodendron aralioides HOM05D000849 ORTHO05D003989 1.2e-19 101.3 96 56.2
Atru.chr7.1508 Acer truncatum HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
Cpa.g.sc78.44 Carica papaya HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
CiPaw.03G221100 Carya illinoinensis HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
Ciclev10009831m.g Citrus clementina HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
Duzib150G0327 Durio zibethinus HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
Eucgr.C00951 Eucalyptus grandis HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
PGR142G0605 Punica granatum HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
Hund26299 Selenicereus undatus HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
Thecc.09G096900 Theobroma cacao HOM05D000849 ORTHO05D003989 2.0e-19 100.5 95 55.8
ClCG03G015970 Citrullus lanatus HOM05D000849 ORTHO05D003989 2.7e-19 100.1 101 54.5
MELO3C015429.2 Cucumis melo HOM05D000849 ORTHO05D003989 2.7e-19 100.1 101 54.5
CsaV3_1G039990 Cucumis sativus L. HOM05D000849 ORTHO05D003989 2.7e-19 100.1 101 54.5
Nn8g39010 Nelumbo nucifera HOM05D000849 ORTHO05D003989 2.7e-19 100.1 95 54.7
HPP92_009846 Vanilla planifolia HOM05D000849 ORTHO05D003989 2.7e-19 100.1 114 49.1
Aqoxy7G03958 Aquilegia oxysepala HOM05D000849 ORTHO05D003989 3.5e-19 99.8 96 53.1
CSS0012070 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D003989 4.5e-19 99.4 96 54.2
Os08g0395300 Oryza sativa ssp. japonica HOM05D000849 ORTHO05D003989 4.5e-19 99.4 96 54.2
Prupe.7G216600 Prunus persica HOM05D000849 ORTHO05D003989 4.5e-19 99.4 114 49.1
Cc06_g10770 Coffea canephora HOM05D000849 ORTHO05D003989 5.9e-19 99.0 95 54.7
Haze_25852 Corylus avellana HOM05D000849 ORTHO05D003989 5.9e-19 99.0 95 54.7
PSO210G0713 Papaver somniferum HOM05D000849 ORTHO05D003989 5.9e-19 99.0 95 54.7
PSO210G7720 Papaver somniferum HOM05D000849 ORTHO05D003989 5.9e-19 99.0 95 54.7
HPP92_024117 Vanilla planifolia HOM05D000849 ORTHO05D003989 5.9e-19 99.0 95 54.7
Ah.09g230330 Amaranthus hybridus HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
MSTRG.19541 Avicennia marina HOM05D000849 ORTHO05D003989 7.7e-19 98.6 114 48.2
EL10Ac8g18347 Beta vulgaris HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
CAN.G1058.10 Capsicum annuum HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
CiPaw.04G154300 Carya illinoinensis HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Dinv42272 Davidia involucrata HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Duzib187G0631 Durio zibethinus HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Migut.K00562 Erythranthe guttata HOM05D000849 ORTHO05D003989 7.7e-19 98.6 115 47.0
Gohir.A05G027200 Gossypium hirsutum HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Gohir.A13G194600 Gossypium hirsutum HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Gohir.D05G029100 Gossypium hirsutum HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Gohir.D13G200300 Gossypium hirsutum HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Gorai.013G229100 Gossypium raimondii HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
MBI04_g06989_MAGBIO Magnolia biondii HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
Oeu036246.1 Olea europaea HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 53.7
Peaxi162Scf00298g00114 Petunia axillaris HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
QL02p086970 Quercus lobata HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
TWI63G0367 Tripterygium wilfordii HOM05D000849 ORTHO05D003989 7.7e-19 98.6 95 54.7
AUR62033272 Chenopodium quinoa HOM05D000849 ORTHO05D003989 1.0e-18 98.2 96 54.2
MD15G1200600 Malus domestica HOM05D000849 ORTHO05D003989 1.0e-18 98.2 114 49.1
Potri.006G149100 Populus trichocarpa HOM05D000849 ORTHO05D003989 1.0e-18 98.2 95 55.8
SGA_v2.0_scaffold279G46782 Striga asiatica HOM05D000849 ORTHO05D003989 1.0e-18 98.2 115 47.8
SGA_v2.0_scaffold302G47808 Striga asiatica HOM05D000849 ORTHO05D003989 1.0e-18 98.2 115 47.8
ATR0705G079 Amborella trichopoda HOM05D000849 ORTHO05D003989 1.3e-18 97.8 95 53.7
Sabra06G0117900 Salix brachista HOM05D000849 ORTHO05D003989 1.3e-18 97.8 95 54.7
Sed0020746 Sechium edule HOM05D000849 ORTHO05D003989 1.3e-18 97.8 95 54.7
unitig_26.g9704 Utricularia gibba HOM05D000849 ORTHO05D003989 1.3e-18 97.8 115 47.0
Os10g0368400 Oryza sativa ssp. japonica HOM05D000849 ORTHO05D003989 1.7e-18 97.4 96 53.1
Zm00001eb178620 Zea mays HOM05D000849 ORTHO05D003989 1.7e-18 97.4 96 53.1
MSTRG.6030 Avicennia marina HOM05D000849 ORTHO05D003989 2.2e-18 97.1 134 43.3
CDE05G3423 Ceratophyllum demersum HOM05D000849 ORTHO05D003989 2.2e-18 97.1 95 53.7
ECA236G3815 Erigeron canadensis HOM05D000849 ORTHO05D003989 2.2e-18 97.1 95 53.7
Lsat_1_v5_gn_8_88280 Lactuca sativa HOM05D000849 ORTHO05D003989 2.2e-18 97.1 95 53.7
Nitab4.5_0004180g0010 Nicotiana tabacum HOM05D000849 ORTHO05D003989 2.2e-18 97.1 95 53.7
vmacro06264 Vaccinium macrocarpon HOM05D000849 ORTHO05D003989 2.2e-18 97.1 95 53.7
VMungo0464G2126 Vigna mungo HOM05D000849 ORTHO05D003989 2.2e-18 97.1 95 53.7
Actinidia17501 Actinidia chinensis HOM05D000849 ORTHO05D003989 2.9e-18 96.7 114 46.5
Aqoxy7G01359 Aquilegia oxysepala HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 52.6
CDE05G2264 Ceratophyllum demersum HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 52.6
FvH4_1g06580 Fragaria vesca HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 54.7
FAN19G1758 Fragaria x ananassa HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 54.7
FAN26G0314 Fragaria x ananassa HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 54.7
FAN26G0318 Fragaria x ananassa HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 54.7
Glyma.01G005300 Glycine max HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 53.7
Glyma.07G126300 Glycine max HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 53.7
Manes.16G106500 Manihot esculenta HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 53.7
Phvul.004G173800 Phaseolus vulgaris HOM05D000849 ORTHO05D003989 2.9e-18 96.7 95 53.7
FAN28G0398 Fragaria x ananassa HOM05D000849 ORTHO05D003989 3.8e-18 96.3 95 53.7
Gorai.009G029200 Gossypium raimondii HOM05D000849 ORTHO05D003989 3.8e-18 96.3 95 53.7
MD02G1069000 Malus domestica HOM05D000849 ORTHO05D003989 3.8e-18 96.3 95 53.7
Mapoly0016s0005 Marchantia polymorpha HOM05D000849 ORTHO05D003989 3.8e-18 96.3 95 54.7
RcHm_v2.0_Chr2g0092321 Rosa chinensis HOM05D000849 ORTHO05D003989 3.8e-18 96.3 95 53.7
Hma1.2p1_0663F.1_g198540 Hydrangea macrophylla HOM05D000849 ORTHO05D003989 5.0e-18 95.9 108 48.1
AL3G48440 Arabidopsis lyrata HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
AT2G19790 Arabidopsis thaliana HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
BcaC04g22820 Brassica carinata HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
A09p12580 Brassica napus HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
C09p14940 Brassica napus HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
BolC7t40613H Brassica oleracea HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
BolC9t54396H Brassica oleracea HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
BraA09t36905Z Brassica rapa HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
Carub.0003s3407 Capsella rubella HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
CARHR110250 Cardamine hirsuta HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
HanXRQChr09g0238561 Helianthus annuus HOM05D000849 ORTHO05D003989 8.5e-18 95.1 114 47.4
PSO063G4962 Papaver somniferum HOM05D000849 ORTHO05D003989 8.5e-18 95.1 115 46.1
PSO782G5042 Papaver somniferum HOM05D000849 ORTHO05D003989 8.5e-18 95.1 115 46.1
Sp3g33140 Schrenkiella parvula HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
SEGI_24636 Sequoiadendron giganteum HOM05D000849 ORTHO05D003989 8.5e-18 95.1 96 52.1
Sc08g0008140 Simmondsia chinensis HOM05D000849 ORTHO05D003989 8.5e-18 95.1 95 52.6
arahy.Tifrunner.gnm1.ann1.URAI8Z Arachis hypogaea HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 52.6
arahy.Tifrunner.gnm1.ann1.XR2T8G Arachis hypogaea HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 52.6
Lalb_Chr14g0375221 Lupinus albus HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 52.6
PSO832G0835 Papaver somniferum HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 51.6
Solyc05g026130.3 Solanum lycopersicum HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 52.6
Sopen05g022340 Solanum pennellii HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 52.6
PGSC0003DMG400028942 Solanum tuberosum HOM05D000849 ORTHO05D003989 1.1e-17 94.7 95 52.6
GSVIVG01015270001 Vitis vinifera HOM05D000849 ORTHO05D003989 1.1e-17 94.7 115 47.0
THA.LOC104820037 Tarenaya hassleriana HOM05D000849 ORTHO05D003989 1.5e-17 94.4 95 52.6
Phvul.002G306700 Phaseolus vulgaris HOM05D000849 ORTHO05D003989 1.9e-17 94.0 95 52.6
VMungo0251G1053 Vigna mungo HOM05D000849 ORTHO05D003989 1.9e-17 94.0 95 52.6
Aa31LG8G16770 Aethionema arabicum HOM05D000849 ORTHO05D003989 2.5e-17 93.6 95 51.6
FAN08G2450 Fragaria x ananassa HOM05D000849 ORTHO05D003989 2.5e-17 93.6 95 53.7
SHI54080 Sapria himalayana HOM05D000849 ORTHO05D003989 2.5e-17 93.6 52 80.8
Lj4g0006741 Lotus japonicus HOM05D000849 ORTHO05D003989 3.2e-17 93.2 95 52.6
PGR102G1239 Punica granatum HOM05D000849 ORTHO05D003989 3.2e-17 93.2 114 47.4
CBR_g2797 Chara braunii HOM05D000849 ORTHO05D003989 5.5e-17 92.4 133 44.4
SHI01895 Sapria himalayana HOM05D000849 ORTHO05D003989 5.5e-17 92.4 54 77.8
SMO196G0114 Selaginella moellendorffii HOM05D000849 ORTHO05D003989 7.2e-17 92.0 96 47.9
Pp3c14_14670 Physcomitrium patens HOM05D000849 ORTHO05D003989 9.4e-17 91.7 95 51.6
BcaB03g16769 Brassica carinata HOM05D000849 ORTHO05D003989 1.2e-16 91.3 96 52.1
BcaC06g36622 Brassica carinata HOM05D000849 ORTHO05D003989 1.2e-16 91.3 96 52.1
A07p00920 Brassica napus HOM05D000849 ORTHO05D003989 1.2e-16 91.3 96 52.1
C07p02080 Brassica napus HOM05D000849 ORTHO05D003989 1.2e-16 91.3 96 52.1
BraA07t27892Z Brassica rapa HOM05D000849 ORTHO05D003989 1.2e-16 91.3 96 52.1
FvH4_5g22770 Fragaria vesca HOM05D000849 ORTHO05D003989 1.6e-16 90.9 95 51.6
FAN18G0868 Fragaria x ananassa HOM05D000849 ORTHO05D003989 1.6e-16 90.9 95 51.6
SHI48305 Sapria himalayana HOM05D000849 ORTHO05D003989 2.1e-16 90.5 84 56.0
THA.LOC104814582 Tarenaya hassleriana HOM05D000849 ORTHO05D003989 2.1e-16 90.5 95 48.4
Ca_17379_v3 Cicer arietinum L. HOM05D000849 ORTHO05D003989 2.7e-16 90.1 95 50.5
Lj2g0010400 Lotus japonicus HOM05D000849 ORTHO05D003989 2.7e-16 90.1 95 50.5
Medtr7g100010 Medicago truncatula HOM05D000849 ORTHO05D003989 2.7e-16 90.1 95 50.5
Medtr8g102180 Medicago truncatula HOM05D000849 ORTHO05D003989 2.7e-16 90.1 95 50.5
Psat7g018560 Pisum sativum HOM05D000849 ORTHO05D003989 2.7e-16 90.1 95 50.5
TPR.G34776 Trifolium pratense HOM05D000849 ORTHO05D003989 2.7e-16 90.1 95 50.5
SHI27184 Sapria himalayana HOM05D000849 ORTHO05D003989 1.0e-15 88.2 53 73.6
SHI23604 Sapria himalayana HOM05D000849 ORTHO05D003989 9.8e-14 81.6 52 67.3
SHI42924 Sapria himalayana HOM05D010923 ORTHO05D003989 1.3e-13 81.3 52 69.2
SHI51537 Sapria himalayana HOM05D000849 ORTHO05D003989 3.7e-13 79.7 61 63.9
SHI52555 Sapria himalayana HOM05D000849 ORTHO05D003989 3.7e-13 79.7 63 60.3
SHI52725 Sapria himalayana HOM05D000849 ORTHO05D003989 3.7e-13 79.7 64 60.9
SHI53623 Sapria himalayana HOM05D000849 ORTHO05D003989 3.7e-13 79.7 63 60.3
Rhsim03G0235600 Rhododendron simsii HOM05D000849 ORTHO05D003989 6.3e-13 79.0 77 53.2
DCAR_028635 Daucus carota HOM05D000849 ORTHO05D003989 1.8e-12 77.4 77 51.9
Actinidia29881 Actinidia chinensis HOM05D000849 ORTHO05D003989 7.0e-12 75.5 68 57.4
SHI20141 Sapria himalayana HOM05D000849 ORTHO05D003989 9.1e-12 75.1 116 38.8
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 9.1e-12 75.1 47 68.1
Cre07.g330950 Chlamydomonas reinhardtii HOM05D000849 ORTHO05D003989 1.2e-11 74.7 96 42.7
MCO15G266 Micromonas commoda HOM05D000849 ORTHO05D003989 1.6e-11 74.3 95 41.1
SalBow6G5864 Salvia bowleyana HOM05D000849 ORTHO05D003989 7.7e-11 72.0 74 48.6
SHI40238 Sapria himalayana HOM05D010923 ORTHO05D003989 7.7e-11 72.0 48 66.7
SHI36351 Sapria himalayana HOM05D010923 ORTHO05D003989 1.0e-10 71.6 43 72.1
Phvul.008G154900 Phaseolus vulgaris HOM05D000849 ORTHO05D003989 5.0e-10 69.3 55 56.4
SHI19583 Sapria himalayana HOM05D000849 ORTHO05D003989 6.5e-10 68.9 67 52.2
SHI35267 Sapria himalayana HOM05D000849 ORTHO05D001857 1.1e-09 68.2 42 71.4
Thhalv10002117m.g Eutrema salsugineum HOM05D000849 ORTHO05D003989 4.2e-09 66.2 71 49.3
Glyma.08G031600 Glycine max HOM05D000849 ORTHO05D003989 4.2e-09 66.2 88 43.2
AagrBONN_evm.TU.Sc2ySwM_362.940 Anthoceros agrestis HOM05D000849 ORTHO05D003989 9.4e-09 65.1 50 62.0
SHI49839 Sapria himalayana HOM05D010923 ORTHO05D003989 4.7e-08 62.8 39 69.2
SHI47843 Sapria himalayana HOM05D000849 ORTHO05D003989 1.4e-07 61.2 102 36.3
SHI51484 Sapria himalayana HOM05D000849 ORTHO05D003989 6.8e-07 58.9 63 50.8
SHI06560 Sapria himalayana HOM05D000849 ORTHO05D003989 2.6e-06 57.0 31 74.2
CANSAT56G1795 Cannabis sativa HOM05D000849 ORTHO05D003989 4.4e-06 56.2 72 45.8
SHI03952 Sapria himalayana HOM05D000849 ORTHO05D003989 5.7e-06 55.8 73 43.8
Oeu048292.1 Olea europaea HOM05D000849 ORTHO05D003989 9.8e-06 55.1 77 42.9


User provided reference genes

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