Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 9.6e-136 486.9 255 100.0
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 9.6e-136 486.9 255 100.0
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 4.3e-112 408.3 221 97.7
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.5e-99 366.7 210 91.9
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 3.6e-98 362.1 205 92.7
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-98 361.3 207 92.8
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-98 361.3 207 92.8
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-98 361.3 207 92.8
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 6.1e-98 361.3 207 92.8
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.9e-97 358.6 207 91.8
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 6.7e-97 357.8 206 92.7
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 6.7e-97 357.8 206 92.7
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 6.7e-97 357.8 206 92.7
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 8.8e-97 357.5 207 92.3
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.1e-96 357.1 207 91.8
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 2.6e-96 355.9 207 92.3
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 2.6e-96 355.9 207 92.3
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 2.6e-96 355.9 207 92.3
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 2.6e-96 355.9 207 92.3
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 2.6e-96 355.9 207 92.3
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 2.6e-96 355.9 207 92.3
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 4.8e-95 351.7 219 87.2
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 3.1e-94 349.0 202 92.6
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 4.5e-93 345.1 207 90.3
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 4.5e-93 345.1 207 90.3
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.0e-92 344.0 216 86.6
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.0e-92 344.0 208 89.4
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.0e-92 344.0 214 87.4
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.7e-92 343.2 207 89.4
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.2e-92 342.8 205 90.2
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.2e-92 342.8 205 90.2
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.2e-92 342.8 205 90.2
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 3.8e-92 342.0 204 90.2
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 3.8e-92 342.0 204 90.2
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.3e-89 332.8 232 78.4
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 5.2e-89 331.6 206 88.3
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 2.6e-88 329.3 204 88.7
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 2.6e-88 329.3 204 88.7
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.7e-84 316.6 216 79.2
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.5e-83 312.8 214 79.9
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 2.5e-83 312.8 204 80.9
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.2e-83 311.2 219 78.1
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 3.6e-82 308.9 197 85.3
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 4.7e-82 308.5 185 89.7
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 3.1e-78 295.8 175 90.9
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 9.1e-78 294.3 189 85.7
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.3e-76 290.4 202 80.7
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.3e-76 290.4 199 81.4
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-74 283.9 219 75.3
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 3.0e-73 279.3 159 91.8
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.9e-68 262.3 219 71.7
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 1.3e-63 247.3 150 87.3
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.9e-62 243.4 174 78.7
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 9.2e-62 241.1 156 83.3
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-60 237.7 140 90.0
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-57 227.3 154 77.9
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 1.2e-56 224.2 129 93.0
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.6e-56 223.0 129 92.2
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.7e-55 220.3 125 93.6
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 3.6e-50 202.6 121 89.3
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.5e-48 197.2 208 61.5
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 2.6e-48 196.4 195 61.5
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.5e-43 180.6 103 95.1
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 1.5e-40 170.6 100 87.0
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.1e-38 164.5 114 81.6
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 5.1e-36 155.6 90 95.6
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 6.6e-36 155.2 100 89.0
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 3.3e-35 152.9 88 96.6
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.1e-34 150.2 191 56.5
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 8.4e-31 138.3 84 86.9
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 1.8e-25 120.6 71 91.5
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.6e-24 115.2 79 84.8
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 8.4e-23 111.7 95 64.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 5.4e-22 109.0 132 56.8
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.5e-19 100.9 57 80.7
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.3e-19 99.8 64 75.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.6e-18 97.4 61 83.6
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 3.7e-18 96.3 71 83.1
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 3.4e-16 89.7 60 85.0
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.5e-16 89.4 68 76.5
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.9e-14 84.0 73 67.1
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 3.2e-14 83.2 90 62.2
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 3.9e-12 76.3 44 93.2
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-09 67.0 37 91.9
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-09 67.0 37 91.9
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 3.1e-09 66.6 37 91.9
CDE02G0177 Ceratophyllum demersum HOM05D003517 ORTHO05D130237 1.1e-06 58.2 122 31.1
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 1.4e-06 57.8 40 80.0
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 9.3e-06 55.1 73 52.1
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 9.3e-06 55.1 73 52.1


User provided reference genes

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