Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI34763 Sapria himalayana HOM05D003253 ORTHO05D002078 2.2e-72 275.4 128 100.0
SHI00452 Sapria himalayana HOM05D007130 ORTHO05D002078 9.1e-34 147.1 134 57.5
SHI01765 Sapria himalayana HOM05D007130 ORTHO05D002078 2.9e-16 89.0 127 44.1
SHI15023 Sapria himalayana HOM05D007130 ORTHO05D002078 5.5e-15 84.7 161 36.6
SHI32255 Sapria himalayana HOM05D007130 ORTHO05D002078 5.5e-15 84.7 122 41.8
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 1.2e-14 83.6 58 56.9
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 6.1e-14 81.3 73 49.3
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.1e-14 81.3 72 47.2
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 2.3e-13 79.3 56 57.1
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 3.0e-13 79.0 61 54.1
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 3.0e-13 79.0 61 54.1
Nitab4.5_0001342g0030 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.0e-13 79.0 72 45.8
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 4.0e-13 78.6 78 41.0
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.0e-13 78.6 68 48.5
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 4.0e-13 78.6 68 48.5
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 5.2e-13 78.2 63 49.2
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 5.2e-13 78.2 60 55.0
Nitab4.5_0001920g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.2e-12 77.0 72 44.4
Potri.010G086700 Populus trichocarpa HOM05D007130 ORTHO05D002078 1.5e-12 76.6 124 33.9
Haze_00888 Corylus avellana HOM05D007130 ORTHO05D002078 2.6e-12 75.9 73 46.6
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.6e-12 75.9 78 38.5
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.4e-12 75.5 59 50.8
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 3.4e-12 75.5 72 43.1
Dinv44541 Davidia involucrata HOM05D007130 ORTHO05D002078 4.4e-12 75.1 74 45.9
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 4.4e-12 75.1 78 39.7
Nn6g34080 Nelumbo nucifera HOM05D003253 ORTHO05D002078 5.7e-12 74.7 53 50.9
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 5.7e-12 74.7 51 52.9
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.7e-12 74.7 56 53.6
EL10Ac7g17523 Beta vulgaris HOM05D003253 ORTHO05D002078 7.5e-12 74.3 63 47.6
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 7.5e-12 74.3 57 49.1
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 9.8e-12 73.9 67 47.8
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 9.8e-12 73.9 63 47.6
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 9.8e-12 73.9 74 44.6
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 1.3e-11 73.6 78 39.7
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 1.3e-11 73.6 63 46.0
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.3e-11 73.6 105 32.4
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 2.2e-11 72.8 63 46.0
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 2.8e-11 72.4 50 52.0
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 2.8e-11 72.4 50 52.0
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 2.8e-11 72.4 63 47.6
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 2.8e-11 72.4 58 44.8
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 3.7e-11 72.0 84 35.7
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 3.7e-11 72.0 60 45.0
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 6.3e-11 71.2 60 48.3
Sabra08G0117300 Salix brachista HOM05D007130 ORTHO05D002078 6.3e-11 71.2 133 33.1
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 8.3e-11 70.9 72 40.3
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 8.3e-11 70.9 54 46.3
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.1e-10 70.5 60 45.0
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 1.4e-10 70.1 57 49.1
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 1.4e-10 70.1 57 49.1
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.8e-10 69.7 54 48.1
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 1.8e-10 69.7 49 53.1
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.4e-10 69.3 60 48.3
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 2.4e-10 69.3 89 36.0
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 3.1e-10 68.9 73 39.7
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 3.1e-10 68.9 57 47.4
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 3.1e-10 68.9 54 50.0
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 4.1e-10 68.6 51 49.0
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 4.1e-10 68.6 50 50.0
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 4.1e-10 68.6 60 48.3
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.1e-10 68.6 60 48.3
Sabra10G0056800 Salix brachista HOM05D007130 ORTHO05D002078 4.1e-10 68.6 126 34.1
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 5.4e-10 68.2 58 44.8
Nitab4.5_0001342g0080 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.4e-10 68.2 58 48.3
Nitab4.5_0004256g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.4e-10 68.2 58 48.3
GSVIVG01017991001 Vitis vinifera HOM05D003253 ORTHO05D002078 5.4e-10 68.2 69 42.0
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 7.0e-10 67.8 72 41.7
Duzib052G0494 Durio zibethinus HOM05D007130 ORTHO05D002078 7.0e-10 67.8 51 54.9
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 9.1e-10 67.4 58 44.8
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 9.1e-10 67.4 89 36.0
Potri.008G153800 Populus trichocarpa HOM05D007130 ORTHO05D002078 9.1e-10 67.4 131 29.8
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 9.1e-10 67.4 53 49.1
Cfa015660 Carpinus fangiana HOM05D007130 ORTHO05D002078 1.2e-09 67.0 74 44.6
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.6e-09 66.6 53 45.3
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.6e-09 66.6 53 45.3
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.6e-09 66.6 53 45.3
Manes.03G177600 Manihot esculenta HOM05D007130 ORTHO05D002078 1.6e-09 66.6 73 42.5
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 1.6e-09 66.6 53 49.1
Thecc.04G233400 Theobroma cacao HOM05D007130 ORTHO05D002078 1.6e-09 66.6 53 54.7
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.0e-09 66.2 73 45.2
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.0e-09 66.2 73 45.2
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 2.0e-09 66.2 63 42.9
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 2.0e-09 66.2 51 47.1
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 2.0e-09 66.2 51 49.0
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 2.0e-09 66.2 51 49.0
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 2.0e-09 66.2 51 49.0
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 2.0e-09 66.2 51 49.0
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 2.0e-09 66.2 51 49.0
Manes.15G029700 Manihot esculenta HOM05D007130 ORTHO05D002078 2.0e-09 66.2 68 47.1
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 2.7e-09 65.9 79 35.4
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 2.7e-09 65.9 78 37.2
Gohir.D02G039300 Gossypium hirsutum HOM05D007130 ORTHO05D002078 2.7e-09 65.9 61 47.5
Gorai.005G043500 Gossypium raimondii HOM05D007130 ORTHO05D002078 2.7e-09 65.9 61 47.5
Solyc09g082130.4 Solanum lycopersicum HOM05D007130 ORTHO05D002078 2.7e-09 65.9 61 45.9
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.7e-09 65.9 51 49.0
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 3.5e-09 65.5 78 41.0
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.5e-09 65.5 123 30.9
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 4.5e-09 65.1 78 37.2
Duzib151G0843 Durio zibethinus HOM05D007130 ORTHO05D002078 4.5e-09 65.1 51 54.9
Cc03_g03890 Coffea canephora HOM05D007130 ORTHO05D002078 5.9e-09 64.7 69 42.0
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 5.9e-09 64.7 51 51.0
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 5.9e-09 64.7 73 39.7
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.9e-09 64.7 73 39.7
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 5.9e-09 64.7 49 49.0
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 5.9e-09 64.7 54 46.3
CAN.G1094.5 Capsicum annuum HOM05D003253 ORTHO05D002078 7.7e-09 64.3 62 43.5
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 7.7e-09 64.3 63 42.9
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 7.7e-09 64.3 58 43.1
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 7.7e-09 64.3 56 46.4
Aa31LG8G9060 Aethionema arabicum HOM05D007130 ORTHO05D002078 1.3e-08 63.5 101 35.6
Cpa.g.sc58.97 Carica papaya HOM05D007130 ORTHO05D002078 1.3e-08 63.5 76 40.8
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.3e-08 63.5 73 38.4
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 1.3e-08 63.5 51 45.1
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 1.3e-08 63.5 51 47.1
VMungo0331G0902 Vigna mungo HOM05D007130 ORTHO05D002078 1.3e-08 63.5 52 50.0
COL.COLO4_21489 Corchorus olitorius HOM05D007130 ORTHO05D002078 1.7e-08 63.2 51 49.0
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.7e-08 63.2 73 39.7
Gohir.A02G032600 Gossypium hirsutum HOM05D007130 ORTHO05D002078 1.7e-08 63.2 61 45.9
THA.LOC104808552 Tarenaya hassleriana HOM05D007130 ORTHO05D002078 1.7e-08 63.2 76 40.8
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 2.2e-08 62.8 44 56.8
Peaxi162Scf00092g00720 Petunia axillaris HOM05D007130 ORTHO05D002078 2.2e-08 62.8 61 41.0
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 3.8e-08 62.0 56 42.9
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 3.8e-08 62.0 50 56.0
Sp3g20280 Schrenkiella parvula HOM05D007130 ORTHO05D002078 3.8e-08 62.0 71 40.8
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 5.0e-08 61.6 56 42.9
Ciclev10005290m.g Citrus clementina HOM05D007130 ORTHO05D002078 5.0e-08 61.6 125 32.0
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 5.0e-08 61.6 59 44.1
BcaB06g26362 Brassica carinata HOM05D007130 ORTHO05D002078 6.5e-08 61.2 70 40.0
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 6.5e-08 61.2 53 41.5
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 6.5e-08 61.2 55 47.3
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 6.5e-08 61.2 55 47.3
AL3G36830 Arabidopsis lyrata HOM05D007130 ORTHO05D002078 8.5e-08 60.8 70 40.0
AT3G22520 Arabidopsis thaliana HOM05D007130 ORTHO05D002078 8.5e-08 60.8 70 40.0
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 8.5e-08 60.8 54 44.4
BcaC05g28042 Brassica carinata HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
BcaC09g49178 Brassica carinata HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
A01p32610 Brassica napus HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
C01p41760 Brassica napus HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
C05p40640 Brassica napus HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
BolC1t04132H Brassica oleracea HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
BolC5t32803H Brassica oleracea HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
BraA01t03389Z Brassica rapa HOM05D007130 ORTHO05D002078 1.1e-07 60.5 70 40.0
BcaC05g28058 Brassica carinata HOM05D007130 ORTHO05D002078 1.5e-07 60.1 70 38.6
A05p26240 Brassica napus HOM05D007130 ORTHO05D002078 1.5e-07 60.1 70 38.6
C05p40720 Brassica napus HOM05D007130 ORTHO05D002078 1.5e-07 60.1 70 38.6
BolC5t32817H Brassica oleracea HOM05D007130 ORTHO05D002078 1.5e-07 60.1 70 38.6
BraA05t21500Z Brassica rapa HOM05D007130 ORTHO05D002078 1.5e-07 60.1 70 38.6
Phvul.010G080100 Phaseolus vulgaris HOM05D007130 ORTHO05D002078 1.5e-07 60.1 52 48.1
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 1.5e-07 60.1 53 43.4
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 1.9e-07 59.7 71 43.7
BcaC01g03442 Brassica carinata HOM05D007130 ORTHO05D002078 1.9e-07 59.7 70 40.0
A03p42790 Brassica napus HOM05D007130 ORTHO05D002078 1.9e-07 59.7 70 40.0
C03p52560 Brassica napus HOM05D007130 ORTHO05D002078 1.9e-07 59.7 70 40.0
BolC3t17525H Brassica oleracea HOM05D007130 ORTHO05D002078 1.9e-07 59.7 70 40.0
BraA03t13426Z Brassica rapa HOM05D007130 ORTHO05D002078 1.9e-07 59.7 70 40.0
Carub.0003s2268 Capsella rubella HOM05D007130 ORTHO05D002078 1.9e-07 59.7 70 40.0
CARHR098410 Cardamine hirsuta HOM05D007130 ORTHO05D002078 1.9e-07 59.7 80 37.5
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 1.9e-07 59.7 52 44.2
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 2.5e-07 59.3 118 30.5
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 2.5e-07 59.3 74 37.8
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 2.5e-07 59.3 49 49.0
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 4.2e-07 58.5 53 45.3
Thhalv10020335m.g Eutrema salsugineum HOM05D007130 ORTHO05D002078 5.5e-07 58.2 70 38.6
Solyc09g061360.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.5e-07 58.2 56 42.9
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 7.2e-07 57.8 55 50.9
Aa31LG9G2460 Aethionema arabicum HOM05D007130 ORTHO05D002078 9.4e-07 57.4 71 40.8
BcaB04g20515 Brassica carinata HOM05D007130 ORTHO05D002078 9.4e-07 57.4 70 38.6
Gohir.D09G218800 Gossypium hirsutum HOM05D007130 ORTHO05D002078 2.7e-06 55.8 51 43.1
Gorai.006G239800 Gossypium raimondii HOM05D007130 ORTHO05D002078 2.7e-06 55.8 51 43.1
Gohir.A09G216400 Gossypium hirsutum HOM05D007130 ORTHO05D002078 3.6e-06 55.5 51 43.1
DCAR_027220 Daucus carota HOM05D007130 ORTHO05D002078 4.7e-06 55.1 61 39.3
AT4G14840 Arabidopsis thaliana HOM05D007130 ORTHO05D002078 8.0e-06 54.3 70 37.1
A05p16760 Brassica napus HOM05D007130 ORTHO05D002078 8.0e-06 54.3 71 36.6
BraA05t20581Z Brassica rapa HOM05D007130 ORTHO05D002078 8.0e-06 54.3 71 36.6


User provided reference genes

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