Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33895 Sapria himalayana HOM05D003443 ORTHO05D008640 1.5e-59 232.6 119 100.0
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 9.7e-14 80.5 129 39.5
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 3.7e-13 78.6 137 38.7
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 1.1e-12 77.0 133 36.8
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 4.1e-12 75.1 128 39.1
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 5.3e-12 74.7 129 34.1
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 9.1e-12 73.9 134 38.1
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 1.2e-11 73.6 130 37.7
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 1.2e-11 73.6 123 38.2
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 1.2e-11 73.6 128 36.7
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 1.5e-11 73.2 109 41.3
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 2.0e-11 72.8 137 35.8
Migut.G00969 Erythranthe guttata HOM05D003443 ORTHO05D008640 2.6e-11 72.4 95 41.1
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.4e-11 72.0 130 38.5
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 4.5e-11 71.6 125 36.8
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 4.5e-11 71.6 131 36.6
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 7.7e-11 70.9 128 38.3
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 7.7e-11 70.9 123 37.4
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.0e-10 70.5 131 34.4
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.0e-10 70.5 128 38.3
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 1.0e-10 70.5 128 36.7
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.7e-10 69.7 135 34.8
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.7e-10 69.7 128 36.7
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 1.7e-10 69.7 126 37.3
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 1.7e-10 69.7 138 36.2
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 2.2e-10 69.3 124 35.5
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 2.2e-10 69.3 138 35.5
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 2.9e-10 68.9 120 35.8
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 2.9e-10 68.9 123 33.3
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 3.8e-10 68.6 125 32.8
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 3.8e-10 68.6 123 33.3
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 5.0e-10 68.2 128 32.8
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 5.0e-10 68.2 124 37.1
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 6.5e-10 67.8 125 39.2
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 6.5e-10 67.8 128 32.8
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 6.5e-10 67.8 128 37.5
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 8.5e-10 67.4 128 32.0
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 8.5e-10 67.4 129 34.1
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 1.1e-09 67.0 124 35.5
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 1.1e-09 67.0 123 34.1
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 1.4e-09 66.6 124 35.5
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.9e-09 66.2 123 32.5
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 2.5e-09 65.9 137 32.1
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 2.5e-09 65.9 125 32.0
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 2.5e-09 65.9 121 36.4
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 2.5e-09 65.9 121 35.5
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 2.5e-09 65.9 121 36.4
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 2.5e-09 65.9 139 34.5
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 4.2e-09 65.1 122 34.4
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 4.2e-09 65.1 122 34.4
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 5.5e-09 64.7 125 31.2
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 5.5e-09 64.7 125 31.2
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 5.5e-09 64.7 125 31.2
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 5.5e-09 64.7 125 32.0
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 5.5e-09 64.7 136 31.6
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 5.5e-09 64.7 96 37.5
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 7.2e-09 64.3 137 32.8
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 7.2e-09 64.3 120 36.7
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 9.4e-09 63.9 128 32.0
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 9.4e-09 63.9 128 36.7
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 9.4e-09 63.9 124 35.5
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 1.6e-08 63.2 127 33.1
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 1.6e-08 63.2 124 35.5
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 2.1e-08 62.8 126 33.3
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 2.1e-08 62.8 127 33.1
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 2.1e-08 62.8 129 32.6
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 2.7e-08 62.4 125 34.4
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 2.7e-08 62.4 128 32.0
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 3.6e-08 62.0 123 35.0
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 3.6e-08 62.0 123 35.0
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 4.7e-08 61.6 124 36.3
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 6.1e-08 61.2 123 32.5
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 6.1e-08 61.2 129 33.3
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 6.1e-08 61.2 120 33.3
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 6.1e-08 61.2 120 31.7
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 7.9e-08 60.8 123 35.8
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.8e-07 59.7 123 30.9
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 1.8e-07 59.7 101 38.6
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 6.7e-07 57.8 127 33.1
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 1.5e-06 56.6 132 31.1
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 3.3e-06 55.5 125 31.2
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 5.7e-06 54.7 108 35.2
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 9.7e-06 53.9 138 32.6


User provided reference genes

Program Settings