Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.7e-131 472.6 230 100.0
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.2e-65 253.8 197 67.0
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 8.0e-65 251.1 229 58.5
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 8.0e-65 251.1 200 64.0
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.4e-64 250.4 200 63.5
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.3e-64 249.6 197 65.5
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.3e-64 249.6 197 62.9
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 3.0e-64 249.2 219 59.4
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 4.0e-64 248.8 194 66.0
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 5.2e-64 248.4 208 61.1
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.2e-64 248.4 194 65.5
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 8.9e-64 247.7 194 66.0
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.2e-63 247.3 198 63.6
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.5e-63 246.9 219 58.9
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 2.0e-63 246.5 211 60.2
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 2.6e-63 246.1 215 60.9
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.6e-63 246.1 197 64.5
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.4e-63 245.7 200 62.5
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 4.4e-63 245.4 197 65.0
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 5.7e-63 245.0 197 63.5
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.7e-62 243.4 219 58.4
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.7e-62 243.4 196 63.3
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 2.8e-62 242.7 198 62.1
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 2.8e-62 242.7 198 61.6
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.8e-62 242.7 198 61.6
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 2.8e-62 242.7 198 62.1
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 3.7e-62 242.3 215 59.5
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 3.7e-62 242.3 198 61.6
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.7e-62 242.3 197 62.9
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.7e-62 242.3 219 59.4
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 6.3e-62 241.5 197 62.4
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 6.3e-62 241.5 197 63.5
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 8.3e-62 241.1 197 61.4
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.1e-61 240.7 197 63.5
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.1e-61 240.7 193 63.7
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.1e-61 240.7 199 61.3
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.8e-61 240.0 197 62.9
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 1.8e-61 240.0 197 61.4
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.8e-61 240.0 194 62.4
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.4e-61 239.6 197 64.0
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.1e-61 239.2 197 62.4
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.1e-61 239.2 197 62.4
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.1e-61 239.2 197 61.4
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 4.1e-61 238.8 199 61.8
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 4.1e-61 238.8 199 62.8
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 4.1e-61 238.8 197 63.5
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 4.1e-61 238.8 215 59.5
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 5.4e-61 238.4 198 61.6
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 7.0e-61 238.0 197 60.9
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 7.0e-61 238.0 199 60.8
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 9.2e-61 237.7 197 62.9
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 9.2e-61 237.7 196 60.7
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 1.2e-60 237.3 197 61.4
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.2e-60 237.3 197 61.9
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 2.0e-60 236.5 197 61.4
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 2.7e-60 236.1 219 54.3
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.7e-60 236.1 212 58.0
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 3.5e-60 235.7 197 62.4
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 3.5e-60 235.7 197 61.9
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 5.9e-60 235.0 193 61.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.0e-59 234.2 197 61.4
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.0e-59 234.2 217 56.2
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.7e-59 233.4 196 61.2
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 2.9e-59 232.6 197 58.9
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 3.9e-59 232.3 197 60.4
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 3.9e-59 232.3 193 60.1
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 8.6e-59 231.1 219 57.1
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.1e-58 230.7 199 60.3
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.5e-58 230.3 199 60.3
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.9e-58 229.9 197 58.9
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.5e-58 229.6 197 59.4
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 3.3e-58 229.2 210 57.1
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.3e-58 228.8 199 59.8
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 5.6e-58 228.4 192 59.9
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.6e-58 228.4 192 59.9
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 5.6e-58 228.4 197 60.9
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 7.3e-58 228.0 197 58.9
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 9.5e-58 227.6 192 59.9
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.2e-57 227.3 192 59.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.2e-57 227.3 218 56.4
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 2.8e-57 226.1 199 56.3
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 2.8e-57 226.1 200 60.0
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.8e-57 226.1 219 54.8
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.8e-57 226.1 199 59.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 4.7e-57 225.3 218 56.0
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 6.1e-57 224.9 196 58.7
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 6.1e-57 224.9 196 59.7
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.0e-56 224.2 198 59.1
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.0e-56 224.2 200 60.0
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.4e-55 219.2 198 58.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 5.8e-55 218.4 197 56.9
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 5.8e-55 218.4 195 60.0
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.5e-55 218.0 192 58.3
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 9.8e-55 217.6 194 59.8
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 6.4e-54 214.9 197 56.3
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.9e-50 203.4 198 53.5
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 2.5e-50 203.0 199 53.8
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 7.3e-50 201.4 197 56.3
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.6e-49 200.3 199 53.8
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.7e-49 198.7 212 51.4
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.7e-46 189.1 195 50.3
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.9e-42 176.8 126 70.6
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 5.4e-37 158.7 209 42.6
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 9.2e-37 157.9 204 47.5
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 4.6e-36 155.6 192 44.8
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 6.6e-35 151.8 186 42.5
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.1e-34 151.0 197 46.7
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.5e-34 149.8 110 63.6
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.6e-33 147.1 196 39.8
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 4.7e-33 145.6 200 42.0
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.4e-29 133.3 204 42.6
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 3.2e-29 132.9 197 42.1
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 4.6e-28 129.0 201 40.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 4.6e-28 129.0 201 40.3
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.3e-21 104.8 96 55.2
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 5.1e-19 99.0 109 47.7
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 4.8e-17 92.4 104 44.2
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.1e-16 89.7 219 33.3
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.2e-15 87.8 130 37.7
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.7e-14 84.0 197 32.5
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.9e-14 82.4 71 59.2
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.9e-13 80.5 48 72.9
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.9e-13 80.5 48 72.9
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 6.2e-09 65.5 51 64.7
BolC4t21966H Brassica oleracea HOM05D004472 ORTHO05D013781 6.4e-06 55.5 43 58.1


User provided reference genes

Program Settings