Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 0.0e+00 2038.8 1018 100.0
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 0.0e+00 1503.0 1030 75.1
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 0.0e+00 1481.5 1035 74.1
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 0.0e+00 1474.9 1037 74.1
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 0.0e+00 1473.4 1032 74.7
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 0.0e+00 1473.0 1032 74.3
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 0.0e+00 1471.8 1036 74.0
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 0.0e+00 1468.4 1039 73.9
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1464.1 1037 73.2
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 0.0e+00 1463.7 1037 73.8
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 0.0e+00 1463.7 1032 73.6
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1463.7 1035 73.0
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 0.0e+00 1463.4 1035 73.5
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 0.0e+00 1463.0 1032 73.4
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 0.0e+00 1462.6 1036 73.1
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 0.0e+00 1462.6 1036 74.0
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1462.2 1037 73.2
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 0.0e+00 1461.8 1036 73.0
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 0.0e+00 1461.4 1033 73.6
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 0.0e+00 1460.7 1030 74.0
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 0.0e+00 1460.3 1035 73.5
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 0.0e+00 1458.7 1032 73.3
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1458.4 1039 73.1
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 1458.0 1030 73.6
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 0.0e+00 1457.2 1032 73.3
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 0.0e+00 1456.8 1035 73.2
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1456.4 1038 73.2
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 0.0e+00 1456.4 1037 72.8
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1455.3 1032 73.1
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 1454.9 1035 73.0
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1454.5 1031 73.4
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 0.0e+00 1453.7 1031 73.4
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 0.0e+00 1453.7 1034 72.9
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1452.2 1038 72.5
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1452.2 1038 72.5
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1029 73.0
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1031 73.1
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1031 73.1
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1031 73.1
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1031 73.1
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1039 72.9
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1041 72.1
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1450.6 1039 72.4
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 0.0e+00 1449.9 1038 72.4
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1449.1 1039 72.6
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1449.1 1038 72.2
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 0.0e+00 1448.7 1037 72.6
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 0.0e+00 1448.3 1034 72.4
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1445.6 1038 72.3
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 0.0e+00 1444.1 1038 72.7
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 0.0e+00 1443.3 1032 72.7
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1443.3 1031 72.7
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1442.9 1038 72.4
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1442.6 1035 72.9
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 0.0e+00 1442.6 1036 72.6
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1439.1 1035 72.5
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 1439.1 1034 72.9
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 0.0e+00 1438.7 1037 72.1
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1438.7 1038 72.0
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 0.0e+00 1438.3 1034 72.8
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 1437.9 1033 72.4
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1437.2 1035 72.5
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1436.8 1034 71.9
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1436.8 1036 72.3
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1436.0 1031 72.3
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1436.0 1034 72.6
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1435.6 1038 72.4
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 0.0e+00 1434.5 1026 72.5
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1430.6 1039 72.0
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1429.1 1029 72.1
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 0.0e+00 1428.7 1040 71.5
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1427.5 1038 72.0
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1426.4 1029 72.0
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1426.4 1032 72.4
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1426.0 1033 71.9
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 0.0e+00 1424.8 1026 72.1
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 0.0e+00 1424.5 1031 71.5
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1422.5 1029 71.9
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1422.1 1028 72.3
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 0.0e+00 1421.8 1021 72.8
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1420.2 1017 73.0
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 0.0e+00 1418.7 1029 71.6
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1418.3 1034 71.2
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1417.9 1026 72.1
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1416.4 1033 71.7
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1414.8 1034 71.0
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 1414.4 1034 71.8
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1414.1 1038 71.3
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 0.0e+00 1412.9 1029 71.4
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1410.6 1030 71.2
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 0.0e+00 1409.8 1028 71.3
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1404.8 1035 70.7
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1404.4 973 75.1
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 0.0e+00 1402.5 1035 71.7
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 0.0e+00 1401.3 1020 71.0
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1397.1 1056 68.6
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 1394.0 1021 70.7
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1390.6 1032 70.6
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 1385.9 1022 70.5
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 0.0e+00 1385.9 1022 70.5
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 0.0e+00 1384.0 996 72.5
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1379.0 1031 69.9
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 1377.5 1031 69.8
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 0.0e+00 1375.5 973 73.7
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 1366.3 1029 69.9
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1364.7 1031 69.4
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 1343.9 971 72.1
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1326.2 1020 68.3
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 0.0e+00 1323.9 1027 67.2
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 0.0e+00 1322.0 1035 67.8
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 1294.3 1028 67.0
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 0.0e+00 1269.6 1047 64.4
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 1263.8 1021 65.7
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 0.0e+00 1261.5 1044 65.8
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 0.0e+00 1246.1 1023 65.8
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1228.8 1007 64.5
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 0.0e+00 1191.0 1018 63.7
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 0.0e+00 1188.3 1062 62.0
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 0.0e+00 1171.4 1030 62.4
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 0.0e+00 1164.8 1065 60.9
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 0.0e+00 1137.9 1035 61.2
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 0.0e+00 1122.1 1063 58.3
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 0.0e+00 1119.8 1059 58.7
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 0.0e+00 1111.7 1053 58.0
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 0.0e+00 1090.1 694 80.1
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 8.7e-289 997.3 728 72.4
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 2.3e-265 919.5 1088 48.7
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 6.1e-250 868.2 667 68.7
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 7.3e-227 791.6 508 79.5
RcHm_v2.0_Chr2g0117961 Rosa chinensis HOM05D003495 ORTHO05D004159 5.9e-144 516.2 350 76.0
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 3.2e-113 414.1 224 88.4
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 9.5e-110 402.5 386 56.7
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.2e-107 395.6 382 56.5
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 9.0e-92 342.8 307 59.6
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 2.0e-91 341.7 379 51.7
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 1.6e-77 295.4 828 29.7
CAN.G497.69 Capsicum annuum HOM05D003495 ORTHO05D004159 1.8e-76 292.0 403 47.4
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 6.7e-71 273.5 644 36.2
CAN.G497.62 Capsicum annuum HOM05D003495 ORTHO05D004159 4.5e-59 234.2 288 49.3
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.9e-57 228.8 310 47.1
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 8.2e-53 213.4 209 56.0
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 1.8e-44 185.7 468 33.3
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 1.8e-36 159.1 149 59.1
RcHm_v2.0_Chr2g0117981 Rosa chinensis HOM05D003495 ORTHO05D004159 2.9e-34 151.8 92 79.3
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 1.7e-29 136.0 139 55.4
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 2.1e-24 119.0 138 49.3
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 2.1e-16 92.4 159 40.9
Actinidia36279 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.9e-09 69.3 156 34.0
Cfa023482 Carpinus fangiana HOM05D003495 ORTHO05D125175 7.3e-09 67.4 250 22.8
BcaB08g36895 Brassica carinata HOM05D003495 ORTHO05D004159 5.2e-07 61.2 37 81.1


User provided reference genes

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