Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 1.4e-125 453.0 227 100.0
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 6.4e-107 391.0 216 92.1
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 1.8e-64 250.0 230 55.7
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 1.8e-64 250.0 236 54.2
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 3.0e-64 249.2 236 55.5
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.5e-63 246.9 241 53.9
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 3.3e-63 245.7 241 51.9
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 7.4e-63 244.6 238 54.6
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 7.4e-63 244.6 239 54.8
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 6.3e-62 241.5 235 54.9
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 6.3e-62 241.5 241 52.7
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 8.2e-62 241.1 228 54.4
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.4e-61 240.4 231 55.0
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 1.4e-61 240.4 239 54.0
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 1.8e-61 240.0 226 55.3
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 1.8e-61 240.0 235 54.5
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 2.4e-61 239.6 239 53.1
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 4.1e-61 238.8 233 54.9
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 4.1e-61 238.8 237 54.0
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 2.0e-60 236.5 240 48.8
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 3.4e-60 235.7 240 52.5
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 4.5e-60 235.3 235 53.6
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 7.7e-60 234.6 231 53.2
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 1.7e-59 233.4 235 51.9
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 1.7e-59 233.4 233 51.5
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.7e-59 233.4 240 52.1
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 1.7e-59 233.4 235 52.3
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 2.9e-59 232.6 239 51.9
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 5.0e-59 231.9 233 51.9
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 8.5e-59 231.1 234 53.0
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 1.1e-58 230.7 235 51.5
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 1.1e-58 230.7 238 53.8
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 1.9e-58 229.9 237 49.8
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 1.9e-58 229.9 237 50.6
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 2.5e-58 229.6 230 53.0
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 2.5e-58 229.6 228 53.9
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.5e-58 229.6 239 52.7
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 7.2e-58 228.0 229 52.0
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 9.4e-58 227.6 240 51.2
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.2e-57 227.3 228 51.3
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 2.1e-57 226.5 234 50.9
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 2.1e-57 226.5 243 49.0
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 2.1e-57 226.5 233 51.9
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 2.1e-57 226.5 233 51.9
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.1e-57 226.5 239 52.3
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 3.6e-57 225.7 230 50.4
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 4.6e-57 225.3 239 50.6
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 4.6e-57 225.3 243 48.6
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 6.1e-57 224.9 237 49.8
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 6.1e-57 224.9 245 46.5
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 1.0e-56 224.2 236 50.0
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 1.0e-56 224.2 239 52.7
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.4e-56 223.8 238 51.3
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.8e-56 223.4 237 48.9
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 1.8e-56 223.4 232 52.2
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 5.1e-56 221.9 240 51.2
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 5.1e-56 221.9 237 48.5
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 5.1e-56 221.9 243 47.7
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 6.7e-56 221.5 243 47.7
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 1.1e-55 220.7 231 48.5
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 1.1e-55 220.7 231 50.6
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 3.3e-55 219.2 231 48.1
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 3.3e-55 219.2 231 49.4
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 1.7e-54 216.9 231 48.5
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.7e-54 216.9 235 49.4
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 1.7e-54 216.9 237 46.8
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 2.2e-54 216.5 228 51.3
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 3.7e-54 215.7 231 48.1
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 6.3e-54 214.9 231 47.6
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 6.3e-54 214.9 231 47.6
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 8.2e-54 214.5 231 48.1
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 1.1e-53 214.2 236 49.6
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 1.4e-53 213.8 231 47.6
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 1.4e-53 213.8 231 47.6
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 1.4e-53 213.8 231 47.2
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.8e-53 213.4 241 47.3
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 1.8e-53 213.4 242 48.3
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 3.1e-53 212.6 231 47.2
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 4.1e-53 212.2 242 49.2
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 4.1e-53 212.2 179 54.2
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 6.9e-53 211.5 242 49.2
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.9e-53 211.5 242 49.2
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 2.6e-52 209.5 233 47.2
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 4.5e-52 208.8 242 48.8
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.0e-51 207.6 261 42.5
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.4e-50 203.8 231 45.5
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 1.9e-50 203.4 189 49.7
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 3.2e-50 202.6 242 47.9
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 4.7e-49 198.7 241 45.2
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 6.1e-49 198.4 169 57.4
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 1.0e-48 197.6 178 54.5
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 3.0e-48 196.1 237 46.4
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 3.0e-48 196.1 222 45.5
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.9e-48 195.7 238 45.0
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 2.0e-47 193.4 238 44.5
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 2.0e-47 193.4 236 43.6
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 1.3e-46 190.7 189 50.8
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 3.7e-46 189.1 228 44.7
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 6.3e-46 188.3 234 44.9
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 6.3e-46 188.3 190 48.4
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 8.2e-46 188.0 207 48.8
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 8.2e-46 188.0 207 48.8
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 2.4e-45 186.4 211 49.3
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 2.4e-45 186.4 228 44.7
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 5.3e-45 185.3 178 50.0
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 1.9e-42 176.8 273 39.9
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 6.7e-40 168.3 221 42.1
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.0e-39 166.8 266 40.6
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 2.0e-39 166.8 225 41.8
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 1.3e-38 164.1 239 39.3
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 4.1e-37 159.1 131 56.5
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 5.3e-37 158.7 231 35.1
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 7.0e-37 158.3 232 38.8
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 9.1e-37 157.9 234 42.3
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 2.0e-36 156.8 232 39.7
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 7.7e-36 154.8 131 52.7
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 1.3e-35 154.1 159 49.7
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 4.2e-34 149.1 274 37.6
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 8.0e-33 144.8 177 40.1
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.2e-31 141.0 133 46.6
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 6.3e-30 135.2 108 61.1
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 4.5e-28 129.0 221 35.7
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 9.4e-26 121.3 179 34.6
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 1.5e-23 114.0 89 60.7
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 9.1e-21 104.8 225 32.9
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.0e-19 99.0 207 33.3
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 8.6e-19 98.2 107 45.8
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 5.6e-18 95.5 107 44.9
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 3.0e-16 89.7 210 28.6
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.2e-12 77.8 65 55.4
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 8.6e-11 71.6 98 45.9
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 2.1e-09 67.0 63 47.6
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.4e-08 64.3 104 38.5
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 5.2e-08 62.4 140 30.7
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 6.8e-08 62.0 153 27.5
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 4.4e-07 59.3 43 58.1
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 4.4e-07 59.3 43 58.1
SHI33527 Sapria himalayana HOM05D005490 ORTHO05D006485 4.4e-07 59.3 48 54.2
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 1.3e-06 57.8 79 41.8
BraA05t20057Z Brassica rapa HOM05D005274 ORTHO05D006485 4.9e-06 55.8 95 36.8
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 8.3e-06 55.1 47 51.1
SEGI_09940 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 8.3e-06 55.1 126 32.5


User provided reference genes

Program Settings