Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 8.0e-285 983.0 476 100.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 8.6e-138 494.6 385 64.9
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.8e-135 486.9 365 65.2
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.3e-135 486.5 372 64.5
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.0e-134 483.4 365 64.9
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.4e-134 482.3 365 63.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 7.5e-134 481.5 386 63.0
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.3e-133 480.7 367 64.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.4e-132 477.2 371 63.1
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.2e-132 476.1 385 61.8
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.6e-131 473.8 365 63.6
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.1e-131 473.4 365 63.0
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.7e-131 473.0 372 63.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.8e-131 471.5 365 62.7
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.7e-130 470.3 378 63.2
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.0e-130 469.5 365 62.7
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.9e-130 469.2 362 63.8
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.9e-130 469.2 361 64.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-129 467.6 360 63.6
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.8e-128 463.0 364 62.9
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.1e-128 461.5 335 66.0
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.8e-127 460.3 367 62.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 4.0e-127 459.1 361 61.8
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.0e-127 459.1 362 62.2
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.2e-127 458.8 358 60.9
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 8.9e-127 458.0 363 61.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.5e-126 457.2 364 61.5
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.0e-126 456.8 335 66.0
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.4e-126 456.1 341 64.5
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 7.6e-126 454.9 372 60.5
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 7.6e-126 454.9 363 63.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-125 453.8 363 62.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-125 453.4 372 61.0
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.2e-125 453.4 349 63.3
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.9e-125 453.0 364 61.8
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.8e-125 452.6 372 60.5
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.8e-125 452.6 365 60.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 6.4e-125 451.8 371 60.9
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 6.4e-125 451.8 359 62.1
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 8.4e-125 451.4 371 60.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 8.4e-125 451.4 372 59.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.1e-124 451.1 340 63.2
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-124 451.1 371 60.4
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-124 450.7 371 60.4
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.4e-124 450.7 371 60.4
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-124 450.3 372 60.5
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.4e-124 449.9 363 61.2
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.4e-124 449.9 363 60.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.4e-124 449.9 362 60.8
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 5.4e-124 448.7 376 61.4
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 7.1e-124 448.4 339 63.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.1e-124 448.4 362 61.3
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 7.1e-124 448.4 362 61.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 9.2e-124 448.0 370 60.3
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 9.2e-124 448.0 360 61.4
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.2e-124 448.0 360 61.4
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.2e-123 447.6 371 60.6
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.6e-123 447.2 379 59.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.6e-123 447.2 340 63.2
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 2.1e-123 446.8 372 59.9
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.1e-123 446.8 361 60.7
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.7e-123 446.4 362 61.0
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.5e-123 446.0 377 58.9
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.5e-123 446.0 377 58.9
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.5e-123 446.0 357 62.2
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.0e-123 445.3 346 63.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 6.0e-123 445.3 336 64.3
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.0e-122 444.5 359 60.2
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.3e-122 443.4 360 61.9
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 5.1e-122 442.2 363 60.3
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 5.1e-122 442.2 361 61.2
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 6.6e-122 441.8 361 59.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 6.6e-122 441.8 375 56.3
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.6e-122 441.4 342 64.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-121 440.3 342 62.6
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 8.1e-120 434.9 306 67.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.1e-119 434.5 374 56.7
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.8e-119 433.7 395 55.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.8e-119 433.7 360 59.7
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.4e-119 433.3 356 59.0
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 3.1e-119 433.0 365 57.0
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 4.0e-119 432.6 386 58.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 4.0e-119 432.6 346 61.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.2e-119 432.2 366 58.2
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 8.9e-119 431.4 356 59.0
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 4.4e-118 429.1 358 57.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 7.6e-118 428.3 319 63.9
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 9.9e-118 427.9 366 57.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.7e-117 427.2 359 57.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.9e-117 426.4 335 62.4
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 6.4e-117 425.2 361 58.2
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 6.4e-117 425.2 377 57.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 8.4e-117 424.9 359 57.1
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.2e-116 422.5 364 57.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.2e-115 421.0 370 57.6
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.6e-115 420.6 359 57.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.7e-115 419.9 308 64.0
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.9e-113 413.7 363 57.9
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.5e-113 413.3 311 63.0
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 7.3e-113 411.8 306 62.7
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.6e-113 411.4 362 56.1
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.3e-112 411.0 363 57.6
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-112 410.6 365 53.7
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.1e-112 410.2 363 56.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.1e-112 410.2 359 57.9
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 4.8e-112 409.1 358 56.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.2e-112 408.7 340 59.1
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-111 407.9 362 55.5
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-111 407.5 327 60.6
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.4e-111 407.5 365 54.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 6.9e-111 405.2 335 57.9
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.5e-110 404.1 364 53.3
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.3e-108 394.8 342 58.2
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.3e-106 391.0 316 61.1
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.5e-105 386.7 348 53.2
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.6e-105 384.8 366 54.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.4e-103 380.9 395 48.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.8e-103 380.6 364 51.9
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.1e-103 379.8 336 56.2
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 5.3e-103 379.0 365 52.6
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.3e-101 374.4 337 53.7
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.2e-99 367.9 304 57.2
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.9e-97 360.5 355 51.0
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.8e-96 356.7 248 66.5
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.3e-95 352.4 281 61.6
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 4.5e-94 349.4 324 51.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.4e-93 345.1 326 53.1
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.4e-92 344.4 348 49.1
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-90 337.0 306 55.6
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.6e-86 323.6 363 49.0
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 2.1e-83 313.9 316 50.3
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.3e-81 306.6 206 72.3
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 6.3e-80 302.4 190 73.2
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.2e-80 302.0 190 74.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.0e-74 283.5 237 55.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 9.7e-73 278.5 221 63.3
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.4e-71 273.9 177 73.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.2e-70 271.6 232 60.3
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 3.4e-70 270.0 397 37.0
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 4.2e-68 263.1 303 43.9
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.7e-67 260.4 257 53.7
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 6.1e-67 259.2 343 40.8
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.8e-56 223.8 231 51.1
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.7e-53 214.5 262 45.4
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.5e-53 212.2 297 38.0
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 5.2e-50 203.0 223 48.0
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.3e-45 187.6 386 32.6
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 5.7e-41 172.9 195 46.2
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 7.5e-33 146.0 125 58.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.7e-24 118.2 134 44.8
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-23 115.2 132 43.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.0e-21 109.0 148 42.6
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.7e-16 90.5 63 65.1
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 4.7e-11 73.6 55 61.8


User provided reference genes

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