Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33070 Sapria himalayana HOM05D002413 ORTHO05D002638 3.7e-37 157.9 91 100.0
SHI26538 Sapria himalayana HOM05D002413 ORTHO05D002638 5.1e-23 110.9 59 89.8
COL.COLO4_09825 Corchorus olitorius HOM05D002413 ORTHO05D002638 7.9e-16 87.0 59 71.2
Gohir.D11G035600 Gossypium hirsutum HOM05D002413 ORTHO05D002638 1.0e-15 86.7 59 71.2
Gohir.A11G032300 Gossypium hirsutum HOM05D002413 ORTHO05D002638 1.4e-15 86.3 59 69.5
Gorai.007G038400 Gossypium raimondii HOM05D002413 ORTHO05D002638 1.4e-15 86.3 59 69.5
MD03G1183300 Malus domestica HOM05D002413 ORTHO05D002638 1.8e-15 85.9 59 69.5
Lj6g0021071 Lotus japonicus HOM05D002413 ORTHO05D002638 5.1e-15 84.3 59 69.5
MD11G1200300 Malus domestica HOM05D002413 ORTHO05D002638 5.1e-15 84.3 59 69.5
Glyma.08G329500 Glycine max HOM05D002413 ORTHO05D002638 6.7e-15 84.0 59 69.5
Gohir.A11G032366 Gossypium hirsutum HOM05D002413 ORTHO05D002638 6.7e-15 84.0 53 73.6
Thecc.07G014400 Theobroma cacao HOM05D002413 ORTHO05D002638 8.8e-15 83.6 59 67.8
Duzib068G0761 Durio zibethinus HOM05D002413 ORTHO05D002638 1.1e-14 83.2 59 67.8
Duzib084G0378 Durio zibethinus HOM05D002413 ORTHO05D002638 1.1e-14 83.2 59 67.8
Manes.03G141000 Manihot esculenta HOM05D002413 ORTHO05D002638 1.1e-14 83.2 59 67.8
arahy.Tifrunner.gnm1.ann1.BMQ6HD Arachis hypogaea HOM05D002413 ORTHO05D002638 3.3e-14 81.6 58 67.2
THA.LOC104813448 Tarenaya hassleriana HOM05D002413 ORTHO05D002638 3.3e-14 81.6 59 66.1
Gohir.A12G179500 Gossypium hirsutum HOM05D002413 ORTHO05D002638 4.3e-14 81.3 59 66.1
Hma1.2p1_1402F.1_g281150 Hydrangea macrophylla HOM05D002413 ORTHO05D002638 4.3e-14 81.3 55 70.9
CSS0010014 Camellia sinensis var. sinensis HOM05D002413 ORTHO05D002638 5.7e-14 80.9 55 69.1
Duzib205G0891 Durio zibethinus HOM05D002413 ORTHO05D002638 5.7e-14 80.9 59 64.4
Gorai.008G195400 Gossypium raimondii HOM05D002413 ORTHO05D002638 5.7e-14 80.9 56 67.9
Medtr3g059000 Medicago truncatula HOM05D002413 ORTHO05D002638 7.4e-14 80.5 54 70.4
Prupe.4G242800 Prunus persica HOM05D002413 ORTHO05D002638 7.4e-14 80.5 56 67.9
Sed0019293 Sechium edule HOM05D002413 ORTHO05D002638 7.4e-14 80.5 52 71.2
Atru.chr2.3685 Acer truncatum HOM05D002413 ORTHO05D002638 9.7e-14 80.1 54 70.4
ClCG09G021320 Citrullus lanatus HOM05D002413 ORTHO05D002638 9.7e-14 80.1 52 71.2
ClCG09G021330 Citrullus lanatus HOM05D002413 ORTHO05D002638 9.7e-14 80.1 52 71.2
MELO3C024936.2 Cucumis melo HOM05D002413 ORTHO05D002638 9.7e-14 80.1 52 71.2
Sed0021905 Sechium edule HOM05D002413 ORTHO05D002638 9.7e-14 80.1 52 71.2
TAR626G0268 Trochodendron aralioides HOM05D002413 ORTHO05D002638 9.7e-14 80.1 59 66.1
PGR083G1251 Punica granatum HOM05D002413 ORTHO05D002638 1.3e-13 79.7 55 67.3
THA.LOC104818108 Tarenaya hassleriana HOM05D002413 ORTHO05D002638 1.3e-13 79.7 60 65.0
GSVIVG01014675001 Vitis vinifera HOM05D002413 ORTHO05D002638 1.3e-13 79.7 55 69.1
Dinv40855 Davidia involucrata HOM05D002413 ORTHO05D002638 1.7e-13 79.3 55 70.9
Actinidia05010 Actinidia chinensis HOM05D002413 ORTHO05D002638 2.8e-13 78.6 55 69.1
Ca_22138_v3 Cicer arietinum L. HOM05D002413 ORTHO05D002638 3.7e-13 78.2 53 69.8
Haze_09820 Corylus avellana HOM05D002413 ORTHO05D002638 3.7e-13 78.2 64 62.5
CsaV3_7G011270 Cucumis sativus L. HOM05D002413 ORTHO05D002638 3.7e-13 78.2 52 69.2
CsaV3_7G012660 Cucumis sativus L. HOM05D002413 ORTHO05D002638 3.7e-13 78.2 52 69.2
CsaV3_7G012700 Cucumis sativus L. HOM05D002413 ORTHO05D002638 3.7e-13 78.2 52 69.2
Lj6g0025765 Lotus japonicus HOM05D002413 ORTHO05D002638 3.7e-13 78.2 57 66.7
Aa31LG3G11610 Aethionema arabicum HOM05D002413 ORTHO05D002638 4.8e-13 77.8 59 62.7
Lalb_Chr20g0114001 Lupinus albus HOM05D002413 ORTHO05D002638 4.8e-13 77.8 61 63.9
Lalb_Chr20g0114031 Lupinus albus HOM05D002413 ORTHO05D002638 4.8e-13 77.8 61 63.9
Lalb_Chr15g0082051 Lupinus albus HOM05D002413 ORTHO05D002638 6.3e-13 77.4 63 60.3
PGR083G2653 Punica granatum HOM05D002413 ORTHO05D002638 6.3e-13 77.4 55 65.5
Cfa020196 Carpinus fangiana HOM05D002413 ORTHO05D002638 8.2e-13 77.0 64 60.9
CiPaw.12G137900 Carya illinoinensis HOM05D002413 ORTHO05D002638 8.2e-13 77.0 52 69.2
Eucgr.F03691 Eucalyptus grandis HOM05D002413 ORTHO05D002638 8.2e-13 77.0 53 67.9
FvH4_3g29340 Fragaria vesca HOM05D002413 ORTHO05D002638 8.2e-13 77.0 56 66.1
FAN11G0549 Fragaria x ananassa HOM05D002413 ORTHO05D002638 8.2e-13 77.0 56 66.1
FAN16G1153 Fragaria x ananassa HOM05D002413 ORTHO05D002638 8.2e-13 77.0 56 66.1
FAN21G2296 Fragaria x ananassa HOM05D002413 ORTHO05D002638 8.2e-13 77.0 56 66.1
FAN25G2842 Fragaria x ananassa HOM05D002413 ORTHO05D002638 8.2e-13 77.0 56 66.1
Psat5g169000 Pisum sativum HOM05D002413 ORTHO05D002638 8.2e-13 77.0 51 70.6
CANSAT11G2683 Cannabis sativa HOM05D002413 ORTHO05D002638 1.4e-12 76.3 57 68.4
Migut.M01656 Erythranthe guttata HOM05D002413 ORTHO05D002638 1.8e-12 75.9 54 68.5
Glyma.08G329400 Glycine max HOM05D002413 ORTHO05D002638 1.8e-12 75.9 54 70.4
TAR629G2256 Trochodendron aralioides HOM05D002413 ORTHO05D002638 1.8e-12 75.9 55 65.5
VMungo0540G2061 Vigna mungo HOM05D002413 ORTHO05D002638 1.8e-12 75.9 52 69.2
Lalb_Chr15g0082111 Lupinus albus HOM05D002413 ORTHO05D002638 2.4e-12 75.5 57 63.2
SGA_v2.0_scaffold171G38876 Striga asiatica HOM05D002413 ORTHO05D002638 2.4e-12 75.5 50 72.0
Carub.0008s1604 Capsella rubella HOM05D002413 ORTHO05D002638 3.1e-12 75.1 60 63.3
Phvul.006G057100 Phaseolus vulgaris HOM05D002413 ORTHO05D002638 4.1e-12 74.7 51 66.7
RcHm_v2.0_Chr5g0053701 Rosa chinensis HOM05D002413 ORTHO05D002638 4.1e-12 74.7 56 64.3
Sc07g0002300 Simmondsia chinensis HOM05D002413 ORTHO05D002638 4.1e-12 74.7 59 61.0
AT5G55670 Arabidopsis thaliana HOM05D002413 ORTHO05D002638 5.3e-12 74.3 60 63.3
Thhalv10012809m.g Eutrema salsugineum HOM05D002413 ORTHO05D002638 5.3e-12 74.3 60 63.3
Glyma.18G077300 Glycine max HOM05D002413 ORTHO05D002638 5.3e-12 74.3 54 68.5
Glyma.18G077400 Glycine max HOM05D002413 ORTHO05D002638 5.3e-12 74.3 54 68.5
Phvul.006G057000 Phaseolus vulgaris HOM05D002413 ORTHO05D002638 5.3e-12 74.3 50 70.0
SGA_v2.0_scaffold168G38559 Striga asiatica HOM05D002413 ORTHO05D002638 5.3e-12 74.3 51 68.6
Oeu005484.1 Olea europaea HOM05D002413 ORTHO05D002638 6.9e-12 73.9 57 66.7
Solyc07g065510.4 Solanum lycopersicum HOM05D002413 ORTHO05D002638 6.9e-12 73.9 52 67.3
Sopen07g033720 Solanum pennellii HOM05D002413 ORTHO05D002638 6.9e-12 73.9 52 67.3
PGSC0003DMG400022171 Solanum tuberosum HOM05D002413 ORTHO05D002638 6.9e-12 73.9 52 67.3
EL10Ac4g07574 Beta vulgaris HOM05D002413 ORTHO05D002638 9.1e-12 73.6 53 66.0
Nitab4.5_0006508g0030 Nicotiana tabacum HOM05D002413 ORTHO05D002638 9.1e-12 73.6 58 63.8
MSTRG.15794 Avicennia marina HOM05D002413 ORTHO05D002638 1.2e-11 73.2 51 66.7
CSS0033067 Camellia sinensis var. sinensis HOM05D002413 ORTHO05D002638 1.2e-11 73.2 54 68.5
Lsat_1_v5_gn_9_89900 Lactuca sativa HOM05D002413 ORTHO05D002638 1.2e-11 73.2 53 62.3
Nitab4.5_0005906g0030 Nicotiana tabacum HOM05D002413 ORTHO05D002638 1.5e-11 72.8 55 67.3
BolC2t07697H Brassica oleracea HOM05D002413 ORTHO05D002638 2.0e-11 72.4 60 60.0
Nitab4.5_0005906g0040 Nicotiana tabacum HOM05D002413 ORTHO05D002638 2.0e-11 72.4 55 67.3
Sp6g17580 Schrenkiella parvula HOM05D002413 ORTHO05D002638 2.0e-11 72.4 60 61.7
Cc05_g14910 Coffea canephora HOM05D002413 ORTHO05D002638 2.6e-11 72.0 47 72.3
Hund01896 Selenicereus undatus HOM05D002413 ORTHO05D002638 2.6e-11 72.0 58 60.3
Nitab4.5_0003491g0090 Nicotiana tabacum HOM05D002413 ORTHO05D002638 3.4e-11 71.6 55 65.5
TWI39G1150 Tripterygium wilfordii HOM05D002413 ORTHO05D002638 3.4e-11 71.6 52 69.2
CARHR268990 Cardamine hirsuta HOM05D002413 ORTHO05D002638 4.5e-11 71.2 61 62.3
Oeu005960.1 Olea europaea HOM05D002413 ORTHO05D002638 4.5e-11 71.2 57 63.2
TWI38G1726 Tripterygium wilfordii HOM05D002413 ORTHO05D002638 7.7e-11 70.5 57 61.4
AL8G31250 Arabidopsis lyrata HOM05D002413 ORTHO05D002638 1.0e-10 70.1 49 71.4
C02p15920 Brassica napus HOM05D002413 ORTHO05D002638 1.0e-10 70.1 60 58.3
Nitab4.5_0003491g0080 Nicotiana tabacum HOM05D002413 ORTHO05D002638 1.0e-10 70.1 55 69.1
A02p09570 Brassica napus HOM05D002413 ORTHO05D002638 1.7e-10 69.3 61 57.4
BraA02t06021Z Brassica rapa HOM05D002413 ORTHO05D002638 1.7e-10 69.3 61 57.4
HanXRQChr03g0074041 Helianthus annuus HOM05D002413 ORTHO05D002638 1.7e-10 69.3 54 64.8
MBI15_g31906_MAGBIO Magnolia biondii HOM05D002413 ORTHO05D002638 6.5e-10 67.4 54 61.1
A10p12980 Brassica napus HOM05D002413 ORTHO05D002638 1.1e-09 66.6 54 57.4
Peaxi162Scf01164g00123 Petunia axillaris HOM05D002413 ORTHO05D002638 1.1e-09 66.6 48 68.8
Ah.06g181410 Amaranthus hybridus HOM05D002413 ORTHO05D002638 1.4e-09 66.2 48 70.8
BcaC01g06386 Brassica carinata HOM05D002413 ORTHO05D002638 1.9e-09 65.9 53 60.4
C03p16330 Brassica napus HOM05D002413 ORTHO05D002638 1.9e-09 65.9 53 60.4
PGR031G0705 Punica granatum HOM05D002413 ORTHO05D002638 1.9e-09 65.9 54 64.8
BcaB08g35930 Brassica carinata HOM05D002413 ORTHO05D002638 2.5e-09 65.5 56 57.1
BcaC04g20206 Brassica carinata HOM05D002413 ORTHO05D002638 2.5e-09 65.5 55 54.5
C09p46690 Brassica napus HOM05D002413 ORTHO05D002638 2.5e-09 65.5 55 54.5
BolC9t57519H Brassica oleracea HOM05D002413 ORTHO05D002638 2.5e-09 65.5 55 54.5
A03p13880 Brassica napus HOM05D002413 ORTHO05D002638 4.2e-09 64.7 53 58.5
BolC3t14056H Brassica oleracea HOM05D002413 ORTHO05D002638 4.2e-09 64.7 53 58.5
BraA03t10691Z Brassica rapa HOM05D002413 ORTHO05D002638 4.2e-09 64.7 53 58.5
TPR.G24142 Trifolium pratense HOM05D002413 ORTHO05D002638 4.2e-09 64.7 53 64.2
BraA10t43392Z Brassica rapa HOM05D002413 ORTHO05D002638 5.5e-09 64.3 54 55.6
Medtr3g058990 Medicago truncatula HOM05D002413 ORTHO05D002638 5.5e-09 64.3 45 66.7
Rhsim06G0229100 Rhododendron simsii HOM05D002413 ORTHO05D002638 7.2e-09 63.9 53 64.2
BcaB01g04355 Brassica carinata HOM05D002413 ORTHO05D002638 1.6e-08 62.8 53 56.6
ECA240G0531 Erigeron canadensis HOM05D002413 ORTHO05D002638 1.6e-08 62.8 49 67.3
AUR62017098 Chenopodium quinoa HOM05D002413 ORTHO05D002638 2.7e-08 62.0 47 63.8
Sc03g0011260 Simmondsia chinensis HOM05D002413 ORTHO05D002638 4.7e-08 61.2 43 72.1
Ca_30466_v3 Cicer arietinum L. HOM05D002413 ORTHO05D002638 1.0e-07 60.1 37 75.7
Aqoxy1G01673 Aquilegia oxysepala HOM05D002413 ORTHO05D002638 6.7e-07 57.4 43 62.8
PSO017G0039 Papaver somniferum HOM05D002413 ORTHO05D002638 8.8e-07 57.0 53 58.5
PSO063G1404 Papaver somniferum HOM05D002413 ORTHO05D002638 1.1e-06 56.6 54 57.4
CDE02G0353 Ceratophyllum demersum HOM05D002413 ORTHO05D002638 2.6e-06 55.5 68 45.6
CDE09G0816 Ceratophyllum demersum HOM05D002413 ORTHO05D002638 2.6e-06 55.5 68 45.6
QL08p004208 Quercus lobata HOM05D002413 ORTHO05D002638 3.3e-06 55.1 55 54.5


User provided reference genes

Program Settings