Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 5.8e-69 264.2 147 100.0
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.7e-16 88.2 58 74.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.7e-16 88.2 58 74.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 9.8e-16 87.4 58 70.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-15 87.0 58 70.7
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-15 87.0 58 70.7
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.3e-15 87.0 58 70.7
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.2e-15 86.3 58 65.5
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.8e-15 85.9 58 69.0
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 4.9e-15 85.1 58 69.0
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.9e-15 85.1 54 70.4
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.3e-15 84.3 58 67.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 8.3e-15 84.3 54 72.2
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.4e-14 83.6 59 69.5
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-14 83.6 58 69.0
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.4e-14 83.6 54 70.4
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.8e-14 83.2 65 61.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.4e-14 82.8 54 70.4
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.1e-14 82.4 54 68.5
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.1e-14 82.0 58 65.5
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 4.1e-14 82.0 58 65.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 5.4e-14 81.6 58 63.8
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.4e-14 81.6 54 68.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.4e-14 81.6 54 68.5
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 5.4e-14 81.6 55 76.4
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.4e-14 81.6 66 59.1
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 7.0e-14 81.3 54 68.5
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 7.0e-14 81.3 58 63.8
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 7.0e-14 81.3 58 65.5
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 9.2e-14 80.9 58 67.2
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 9.2e-14 80.9 58 63.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 9.2e-14 80.9 59 67.8
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.2e-13 80.5 58 63.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.2e-13 80.5 59 66.1
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.2e-13 80.5 58 60.3
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.6e-13 80.1 54 68.5
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.6e-13 80.1 58 62.1
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.0e-13 79.7 58 60.3
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.0e-13 79.7 58 62.1
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.7e-13 79.3 58 63.8
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.7e-13 79.3 60 65.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 3.5e-13 79.0 55 70.9
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 3.5e-13 79.0 59 66.1
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 4.5e-13 78.6 55 67.3
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 4.5e-13 78.6 58 63.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 4.5e-13 78.6 59 66.1
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 5.9e-13 78.2 59 62.7
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.9e-13 78.2 60 66.7
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 5.9e-13 78.2 64 64.1
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 7.8e-13 77.8 54 68.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 7.8e-13 77.8 54 68.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.8e-13 77.8 58 65.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 7.8e-13 77.8 59 61.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.8e-13 77.8 54 64.8
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 7.8e-13 77.8 58 62.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 7.8e-13 77.8 69 56.5
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 7.8e-13 77.8 61 60.7
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.0e-12 77.4 59 62.7
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.0e-12 77.4 59 62.7
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.0e-12 77.4 59 62.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.3e-12 77.0 59 64.4
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-12 77.0 59 62.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-12 77.0 59 62.7
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.3e-12 77.0 58 63.8
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.7e-12 76.6 59 62.7
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.3e-12 76.3 54 64.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-12 76.3 61 67.2
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.8e-12 75.5 59 62.7
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.8e-12 75.5 59 59.3
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.8e-12 75.5 59 59.3
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 3.8e-12 75.5 58 60.3
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.0e-12 75.1 54 63.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 6.6e-12 74.7 49 71.4
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 6.6e-12 74.7 59 59.3
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 6.6e-12 74.7 59 59.3
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 6.6e-12 74.7 60 61.7
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 8.6e-12 74.3 55 69.1
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 8.6e-12 74.3 55 69.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 8.6e-12 74.3 55 69.1
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 8.6e-12 74.3 60 58.3
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 8.6e-12 74.3 59 62.7
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 8.6e-12 74.3 59 61.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 8.6e-12 74.3 52 73.1
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 8.6e-12 74.3 61 65.6
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 8.6e-12 74.3 53 64.2
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-11 73.9 60 65.0
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.1e-11 73.9 55 61.8
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.5e-11 73.6 59 61.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.9e-11 73.2 60 63.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.9e-11 73.2 61 55.7
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.9e-11 73.2 59 57.6
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.5e-11 72.8 56 67.9
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.5e-11 72.8 49 69.4
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.5e-11 72.8 56 67.9
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.3e-11 72.4 54 64.8
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.3e-11 72.4 53 67.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.3e-11 72.4 53 67.9
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.3e-11 72.4 53 67.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 4.3e-11 72.0 63 54.0
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 4.3e-11 72.0 54 63.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 5.6e-11 71.6 55 63.6
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.3e-11 71.2 49 69.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 9.5e-11 70.9 70 57.1
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 9.5e-11 70.9 60 55.0
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-10 70.5 55 58.2
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.2e-10 70.5 54 59.3
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-10 70.5 59 55.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.1e-10 69.7 60 60.0
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.8e-10 69.3 63 54.0
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.6e-10 68.9 64 53.1
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.6e-10 68.9 64 53.1
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.6e-10 68.9 53 66.0
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 4.7e-10 68.6 55 65.5
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 6.1e-10 68.2 70 55.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 6.1e-10 68.2 53 64.2
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 8.0e-10 67.8 63 52.4
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 8.0e-10 67.8 59 54.2
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.4e-09 67.0 53 56.6
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.4e-09 67.0 53 56.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.4e-09 67.0 54 59.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-09 66.6 44 68.2
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.8e-09 66.6 50 62.0
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.3e-09 66.2 60 56.7
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-09 66.2 49 61.2
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.0e-09 65.5 59 57.6
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.0e-09 65.5 59 54.2
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.2e-08 63.9 68 52.9
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.2e-08 63.9 58 51.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.2e-08 63.9 59 52.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.6e-08 62.8 44 63.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.4e-08 62.0 58 50.0
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 2.2e-07 59.7 59 45.8
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.4e-06 57.0 43 58.1


User provided reference genes

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