Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 6.9e-171 604.0 324 100.0
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 5.8e-69 265.4 300 55.0
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 2.9e-68 263.1 300 55.7
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 4.9e-68 262.3 282 58.5
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 4.9e-68 262.3 307 54.4
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.1e-67 261.2 300 55.3
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 1.1e-67 261.2 286 58.0
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.4e-67 260.8 302 55.0
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.4e-67 260.0 297 54.2
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 3.2e-67 259.6 286 57.3
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 7.1e-67 258.5 296 55.4
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 7.1e-67 258.5 300 55.3
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 9.2e-67 258.1 300 54.7
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.2e-67 258.1 300 54.3
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 1.2e-66 257.7 301 55.5
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 1.2e-66 257.7 288 55.2
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 1.6e-66 257.3 292 54.8
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 1.6e-66 257.3 297 54.9
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 2.1e-66 256.9 315 52.7
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 2.7e-66 256.5 300 54.0
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 3.5e-66 256.1 297 54.5
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 4.6e-66 255.8 296 53.7
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 4.6e-66 255.8 286 56.6
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 6.0e-66 255.4 297 54.5
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 7.8e-66 255.0 296 53.4
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.0e-65 254.6 277 57.8
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 1.0e-65 254.6 315 52.4
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 1.0e-65 254.6 297 55.2
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 1.0e-65 254.6 297 55.6
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 1.3e-65 254.2 297 54.2
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 1.3e-65 254.2 297 54.2
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.7e-65 253.8 300 53.0
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.0e-65 253.1 316 51.9
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 3.0e-65 253.1 295 54.2
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 3.9e-65 252.7 284 56.0
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 5.1e-65 252.3 291 53.6
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 5.1e-65 252.3 300 54.0
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 6.6e-65 251.9 277 57.0
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 6.6e-65 251.9 316 51.6
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 6.6e-65 251.9 316 51.6
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 1.1e-64 251.1 300 54.7
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.5e-64 250.8 274 58.4
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.9e-64 250.4 298 54.4
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 2.5e-64 250.0 277 58.1
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 2.5e-64 250.0 300 54.0
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.5e-64 250.0 288 56.6
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 3.3e-64 249.6 298 54.0
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 3.3e-64 249.6 283 56.2
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 9.6e-64 248.1 305 52.5
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.6e-63 247.3 317 51.7
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 2.1e-63 246.9 275 56.7
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.1e-63 246.9 278 55.8
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.1e-63 246.9 270 58.1
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 2.8e-63 246.5 260 56.9
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 6.2e-63 245.4 279 55.9
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 6.2e-63 245.4 304 53.0
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 6.2e-63 245.4 286 55.2
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 6.2e-63 245.4 319 51.4
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 6.2e-63 245.4 276 56.5
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 8.1e-63 245.0 279 55.9
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 8.1e-63 245.0 286 55.2
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 1.1e-62 244.6 277 55.2
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.1e-62 244.6 277 56.3
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.1e-62 244.6 275 56.4
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 1.1e-62 244.6 300 53.3
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 1.1e-62 244.6 297 53.5
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.4e-62 244.2 275 56.4
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 3.1e-62 243.0 276 55.4
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 4.0e-62 242.7 298 52.7
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 4.0e-62 242.7 262 55.7
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 4.0e-62 242.7 272 55.1
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 4.0e-62 242.7 320 51.6
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 5.2e-62 242.3 300 51.7
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 8.9e-62 241.5 276 54.7
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 8.9e-62 241.5 279 54.8
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 8.9e-62 241.5 282 54.3
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 2.6e-61 240.0 276 55.4
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 2.6e-61 240.0 276 55.4
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 2.6e-61 240.0 280 54.6
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.6e-61 240.0 281 54.4
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.6e-61 240.0 281 54.4
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 3.4e-61 239.6 302 52.3
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 4.4e-61 239.2 276 55.4
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 5.8e-61 238.8 259 57.1
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 5.8e-61 238.8 298 52.3
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 7.6e-61 238.4 314 50.3
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 7.6e-61 238.4 295 52.9
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 9.9e-61 238.0 326 49.7
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 9.9e-61 238.0 291 52.6
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 9.9e-61 238.0 328 49.1
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 9.9e-61 238.0 275 54.9
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 9.9e-61 238.0 366 45.6
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-60 237.7 276 54.0
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.9e-60 236.5 297 51.2
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.4e-60 235.3 338 47.9
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 6.4e-60 235.3 261 56.3
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 6.4e-60 235.3 301 51.8
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.4e-60 235.0 340 47.9
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 8.4e-60 235.0 270 57.0
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 8.4e-60 235.0 273 53.5
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 8.4e-60 235.0 298 51.0
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 3.2e-59 233.0 302 51.0
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.2e-59 233.0 296 51.7
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 4.2e-59 232.6 302 51.0
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 5.4e-59 232.3 295 50.2
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 7.1e-59 231.9 271 53.5
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 9.3e-59 231.5 343 48.1
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.2e-58 231.1 302 49.7
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 1.2e-58 231.1 295 50.8
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.2e-58 231.1 299 51.8
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 2.7e-58 229.9 302 50.7
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 2.7e-58 229.9 259 54.8
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 2.7e-58 229.9 298 50.3
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 3.5e-58 229.6 302 50.3
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 7.8e-58 228.4 276 53.6
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 1.0e-57 228.0 302 50.7
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 1.3e-57 227.6 302 51.0
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 1.7e-57 227.3 302 50.3
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.3e-57 226.9 290 52.4
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 3.0e-57 226.5 302 50.7
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 3.9e-57 226.1 302 50.3
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 3.9e-57 226.1 302 50.3
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 5.1e-57 225.7 302 50.3
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 5.1e-57 225.7 352 45.2
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 1.1e-56 224.6 282 51.4
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 2.5e-56 223.4 276 51.8
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.3e-55 221.1 230 58.3
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 2.8e-55 219.9 240 55.4
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 2.8e-55 219.9 331 47.1
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 3.6e-55 219.5 273 51.6
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 6.2e-55 218.8 260 52.3
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 1.5e-53 214.2 280 49.3
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 2.6e-53 213.4 252 52.4
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 9.9e-53 211.5 210 59.5
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 2.9e-52 209.9 270 49.6
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.9e-52 209.1 217 58.5
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 4.9e-52 209.1 279 48.7
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 8.4e-52 208.4 272 51.1
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 7.1e-51 205.3 300 47.7
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 9.3e-51 204.9 370 42.7
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 6.0e-50 202.2 218 56.4
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 7.8e-50 201.8 217 57.1
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 3.0e-49 199.9 221 57.5
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 1.5e-48 197.6 239 53.6
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 3.3e-48 196.4 187 63.6
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 2.8e-47 193.4 328 45.4
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 4.0e-46 189.5 289 46.4
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 2.0e-45 187.2 228 49.6
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 2.0e-45 187.2 282 47.2
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 2.2e-44 183.7 298 45.6
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 2.9e-44 183.3 246 48.0
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 3.4e-37 159.8 143 61.5
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 5.8e-37 159.1 241 41.1
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 8.4e-36 155.2 259 46.7
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.2e-34 151.4 163 54.0
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.4e-32 142.1 136 59.6
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.8e-31 140.2 220 46.8
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 8.2e-31 138.7 223 43.0
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 4.1e-30 136.3 267 39.0
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 1.3e-28 131.3 106 64.2
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.4e-28 128.6 195 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 4.2e-27 126.3 207 40.1
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 4.2e-27 126.3 238 37.4
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 7.1e-27 125.6 129 59.7
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 2.3e-25 120.6 134 56.7
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 5.1e-25 119.4 197 39.6
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.1e-24 118.2 159 51.6
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 3.3e-24 116.7 159 52.2
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 4.1e-22 109.8 247 35.2
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.1e-19 101.7 134 53.7
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.7e-18 97.1 315 31.7
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 3.6e-18 96.7 82 69.5
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 6.1e-18 95.9 92 57.6
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 2.6e-13 80.5 100 53.0
Ca_29066_v3 Cicer arietinum L. HOM05D003590 ORTHO05D147848 2.5e-11 73.9 211 28.4
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.2e-11 72.4 90 47.8
AL2G21940 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 4.7e-10 69.7 94 45.7
AL2G21120 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 6.1e-10 69.3 91 47.3
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 6.7e-09 65.9 75 53.3
CiPaw.09G006800 Carya illinoinensis HOM05D003590 ORTHO05D004290 4.4e-08 63.2 62 59.7
EL10Ac4g08485 Beta vulgaris HOM05D003590 ORTHO05D004290 1.7e-07 61.2 73 46.6
EL10Ac4g08487 Beta vulgaris HOM05D003590 ORTHO05D004290 1.7e-07 61.2 73 46.6
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 3.1e-06 57.0 80 48.8
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 7.0e-06 55.8 80 48.8


User provided reference genes

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