Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 3.6e-157 558.1 274 100.0
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 1.4e-47 194.1 152 73.0
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 5.8e-46 188.7 160 67.5
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 1.1e-36 157.9 134 67.2
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.4e-36 156.8 134 66.4
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 4.2e-36 156.0 134 65.7
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.2e-35 154.5 134 64.9
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.6e-35 154.1 134 64.9
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.7e-35 153.3 134 64.2
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.7e-35 153.3 135 63.0
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 6.0e-35 152.1 134 64.2
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 7.9e-35 151.8 135 63.0
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.0e-34 151.4 135 62.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.3e-34 151.0 134 63.4
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.3e-34 151.0 134 63.4
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.3e-34 151.0 134 63.4
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.3e-34 151.0 134 63.4
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.8e-34 150.6 134 63.4
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.3e-34 150.2 135 63.0
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.3e-34 150.2 135 63.0
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 2.3e-34 150.2 134 64.2
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 3.0e-34 149.8 134 63.4
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 3.0e-34 149.8 134 63.4
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 5.1e-34 149.1 134 61.9
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 5.1e-34 149.1 134 62.7
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 5.1e-34 149.1 134 62.7
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 5.1e-34 149.1 134 62.7
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 6.7e-34 148.7 134 62.7
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 6.7e-34 148.7 134 64.2
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 6.7e-34 148.7 119 70.6
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.7e-34 148.3 134 63.4
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 8.7e-34 148.3 134 62.7
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.1e-33 147.9 134 63.4
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.1e-33 147.9 134 63.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.1e-33 147.9 134 63.4
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.1e-33 147.9 134 63.4
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.1e-33 147.9 134 63.4
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.5e-33 147.5 135 63.0
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.9e-33 147.1 134 62.7
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-33 147.1 134 61.9
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-33 147.1 134 61.9
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-33 147.1 134 61.9
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.9e-33 147.1 134 61.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.5e-33 146.7 134 61.9
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 5.6e-33 145.6 134 60.4
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 7.4e-33 145.2 134 62.7
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 9.6e-33 144.8 134 61.9
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.3e-32 144.4 134 61.2
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.6e-32 144.1 134 61.2
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.6e-32 144.1 135 60.7
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.6e-32 144.1 135 59.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.6e-32 144.1 135 60.0
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.6e-32 144.1 134 61.2
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.6e-32 144.1 135 60.7
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 2.1e-32 143.7 134 61.9
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 2.1e-32 143.7 134 61.9
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 3.7e-32 142.9 134 61.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.7e-32 142.9 134 60.4
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 4.8e-32 142.5 134 60.4
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 4.8e-32 142.5 153 54.9
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.8e-32 142.5 133 60.2
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 4.8e-32 142.5 134 61.2
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 4.8e-32 142.5 134 60.4
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 4.8e-32 142.5 134 60.4
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 6.2e-32 142.1 134 61.2
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.2e-32 142.1 135 59.3
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 8.2e-32 141.7 134 60.4
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.1e-31 141.4 134 60.4
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.4e-31 141.0 134 60.4
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.4e-31 141.0 135 59.3
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.4e-31 141.0 134 61.2
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.8e-31 140.6 134 59.7
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.8e-31 140.6 134 60.4
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 2.4e-31 140.2 134 60.4
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.4e-31 140.2 134 59.7
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 2.4e-31 140.2 134 59.0
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 2.4e-31 140.2 134 59.7
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 4.0e-31 139.4 134 59.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.0e-31 139.4 134 59.0
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 5.3e-31 139.0 135 58.5
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 6.9e-31 138.7 136 59.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 6.9e-31 138.7 134 60.4
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 6.9e-31 138.7 134 60.4
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 6.9e-31 138.7 134 58.2
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 6.9e-31 138.7 134 60.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 9.0e-31 138.3 134 59.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.2e-30 137.9 135 57.8
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.5e-30 137.5 134 59.7
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 1.5e-30 137.5 134 60.4
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 2.0e-30 137.1 134 60.4
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 2.0e-30 137.1 134 58.2
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.6e-30 136.7 135 60.0
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.6e-30 136.7 135 60.0
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.6e-30 136.7 131 58.8
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 3.4e-30 136.3 134 59.0
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 7.6e-30 135.2 131 58.0
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.3e-29 134.4 134 59.0
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 1.3e-29 134.4 134 57.5
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.7e-29 134.0 135 57.8
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.2e-29 133.7 134 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 4.9e-29 132.5 134 56.0
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 4.9e-29 132.5 135 59.3
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 8.4e-29 131.7 135 59.3
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.1e-28 131.3 134 58.2
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.1e-28 131.3 134 58.2
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.4e-28 131.0 134 56.0
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.1e-27 127.1 131 55.0
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 6.0e-27 125.6 134 53.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 6.0e-27 125.6 134 53.7
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-26 124.8 135 53.3
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 9.7e-25 118.2 92 72.8
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 6.3e-24 115.5 134 49.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.1e-23 114.8 91 68.1
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.4e-23 114.4 91 67.0
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.4e-23 113.6 113 58.4
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 9.0e-23 111.7 134 50.0
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 4.5e-22 109.4 120 53.3
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 2.5e-20 103.6 90 60.0
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 4.2e-20 102.8 131 47.3
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 4.3e-17 92.8 153 43.1
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 4.2e-12 76.3 59 66.1
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 7.2e-12 75.5 61 62.3
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 9.4e-12 75.1 54 72.2
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 4.4e-09 66.2 53 64.2
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.7e-09 65.9 122 36.9
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.4e-07 61.2 129 35.7


User provided reference genes

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