Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 2.1e-167 592.4 324 100.0
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 3.3e-48 196.4 373 39.7
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 8.1e-47 191.8 386 35.8
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 1.8e-46 190.7 386 36.0
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 2.4e-46 190.3 393 35.6
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 3.1e-46 189.9 361 38.8
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 1.2e-45 188.0 380 37.4
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 2.6e-45 186.8 365 36.4
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 2.2e-44 183.7 383 35.2
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 2.2e-44 183.7 375 37.3
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 3.8e-44 183.0 384 35.7
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 3.8e-44 183.0 361 37.4
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 6.4e-44 182.2 380 36.3
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 8.4e-44 181.8 345 37.4
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 1.1e-43 181.4 350 37.1
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.9e-43 180.6 382 35.9
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 4.2e-43 179.5 382 35.9
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 5.4e-43 179.1 352 36.9
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 7.1e-43 178.7 361 36.8
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 4.6e-42 176.0 351 36.8
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 7.9e-42 175.3 370 36.8
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 1.0e-41 174.9 371 35.8
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 1.0e-41 174.9 347 36.3
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 1.3e-41 174.5 342 35.4
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 1.8e-41 174.1 347 36.3
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 3.9e-41 172.9 342 35.1
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 3.9e-41 172.9 377 34.0
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 6.7e-41 172.2 369 35.2
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 8.7e-41 171.8 357 35.0
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 1.5e-40 171.0 342 35.1
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 1.9e-40 170.6 374 34.0
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 2.5e-40 170.2 316 36.7
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 3.3e-40 169.9 386 35.0
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 4.3e-40 169.5 312 38.5
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 4.3e-40 169.5 387 34.9
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 5.6e-40 169.1 369 34.7
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 5.6e-40 169.1 347 36.3
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 7.4e-40 168.7 353 36.8
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 2.8e-39 166.8 380 34.7
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 6.2e-39 165.6 361 35.2
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 8.1e-39 165.2 372 35.8
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 1.1e-38 164.9 388 32.0
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 1.8e-38 164.1 355 35.5
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 4.0e-38 162.9 362 34.5
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 5.3e-38 162.5 344 36.3
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 5.3e-38 162.5 376 33.0
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 5.3e-38 162.5 325 36.0
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 6.9e-38 162.2 374 34.5
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 1.2e-37 161.4 357 34.7
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 3.4e-37 159.8 368 34.0
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 3.4e-37 159.8 337 36.2
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 7.6e-37 158.7 371 34.2
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 3.8e-36 156.4 310 37.4
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 4.9e-36 156.0 382 32.5
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 1.1e-35 154.8 341 34.6
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 1.4e-35 154.5 340 34.7
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 4.2e-35 152.9 337 33.8
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 1.2e-34 151.4 382 31.9
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 1.8e-33 147.5 327 35.5
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 1.8e-33 147.5 327 35.5
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.9e-32 144.1 334 33.8
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 5.7e-32 142.5 388 33.0
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 7.4e-32 142.1 347 33.4
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 6.2e-31 139.0 261 39.1
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 3.1e-30 136.7 323 33.1
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 4.1e-30 136.3 335 34.9
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 1.2e-29 134.8 383 30.8
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 1.5e-29 134.4 331 31.4
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 1.5e-29 134.4 273 39.6
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 2.6e-29 133.7 359 32.9
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 2.9e-28 130.2 298 34.2
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 1.1e-27 128.3 263 36.1
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 5.5e-27 125.9 374 30.7
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 2.1e-26 124.0 321 32.1
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 2.1e-26 124.0 315 31.1
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 6.7e-25 119.0 230 37.0
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 4.3e-24 116.3 108 56.5
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 2.8e-23 113.6 233 38.2
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 2.8e-23 113.6 233 38.2
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 3.7e-23 113.2 260 33.1
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 8.2e-23 112.1 353 28.3
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 8.2e-23 112.1 354 28.8
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 1.4e-22 111.3 115 52.2
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 1.4e-22 111.3 354 28.0
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 1.2e-21 108.2 136 48.5
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 2.6e-21 107.1 286 31.8
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 5.9e-21 105.9 353 27.8
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 5.9e-21 105.9 353 27.8
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 1.0e-20 105.1 354 27.7
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 1.3e-20 104.8 353 27.5
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 1.3e-20 104.8 339 28.9
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 3.8e-20 103.2 262 31.7
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 1.1e-19 101.7 339 28.3
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 2.5e-19 100.5 337 28.5
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 4.2e-19 99.8 321 30.8
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 5.5e-19 99.4 354 26.3
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 7.2e-19 99.0 321 30.8
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 9.4e-19 98.6 240 32.9
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 3.6e-18 96.7 343 28.9
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 1.8e-17 94.4 265 27.5
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 1.5e-16 91.3 107 44.9
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 9.7e-16 88.6 139 38.1
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 9.7e-16 88.6 202 36.1
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 8.2e-15 85.5 167 36.5
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 7.2e-11 72.4 306 26.5
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 7.9e-10 68.9 202 32.2
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 1.0e-09 68.6 193 33.2
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.4e-09 68.2 260 29.2
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.8e-09 67.8 202 29.7
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 2.8e-07 60.5 141 33.3
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 8.2e-07 58.9 265 26.8


User provided reference genes

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