Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32497 Sapria himalayana HOM05D000141 ORTHO05D016149 1.0e-114 416.8 209 100.0
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 8.0e-64 247.7 180 68.3
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 4.9e-61 238.4 179 66.5
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 6.4e-61 238.0 182 64.8
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 2.4e-60 236.1 179 65.9
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 5.4e-60 235.0 179 64.8
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 7.0e-60 234.6 179 64.8
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 1.2e-59 233.8 182 63.2
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 2.1e-59 233.0 179 64.2
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.1e-59 233.0 179 63.7
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.1e-59 233.0 179 63.7
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 2.1e-59 233.0 179 65.4
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 2.7e-59 232.6 179 65.4
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 2.7e-59 232.6 179 63.7
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.7e-59 232.6 179 62.6
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 3.5e-59 232.3 179 64.2
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 4.6e-59 231.9 182 63.7
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 6.0e-59 231.5 179 64.8
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 6.0e-59 231.5 179 63.7
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 6.0e-59 231.5 179 63.1
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 6.0e-59 231.5 179 63.1
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 7.8e-59 231.1 179 65.4
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 7.8e-59 231.1 179 63.1
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 1.0e-58 230.7 179 64.2
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 1.0e-58 230.7 179 64.2
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.0e-58 230.7 179 62.6
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 1.3e-58 230.3 179 64.8
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 1.3e-58 230.3 179 63.1
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 1.3e-58 230.3 179 63.7
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 1.7e-58 229.9 179 64.2
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 1.7e-58 229.9 179 64.2
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 2.3e-58 229.6 179 63.1
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 3.0e-58 229.2 182 61.5
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 3.9e-58 228.8 182 63.7
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 6.6e-58 228.0 179 62.6
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 6.6e-58 228.0 182 61.0
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 8.6e-58 227.6 182 62.1
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 8.6e-58 227.6 179 62.6
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 1.1e-57 227.3 179 62.6
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 1.1e-57 227.3 179 63.1
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 1.1e-57 227.3 179 62.6
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 1.5e-57 226.9 182 61.5
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 1.5e-57 226.9 179 62.6
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 1.5e-57 226.9 179 62.0
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 1.9e-57 226.5 179 61.5
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 1.9e-57 226.5 186 60.8
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 4.3e-57 225.3 179 61.5
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 4.3e-57 225.3 179 61.5
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 4.3e-57 225.3 179 62.6
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 7.3e-57 224.6 181 61.3
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 9.5e-57 224.2 179 60.3
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.2e-56 223.8 181 62.4
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 1.2e-56 223.8 179 63.7
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 1.2e-56 223.8 179 62.6
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 1.6e-56 223.4 179 63.1
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 1.6e-56 223.4 179 61.5
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 2.1e-56 223.0 182 61.5
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 2.1e-56 223.0 179 61.5
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 2.1e-56 223.0 184 59.2
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 2.8e-56 222.6 179 62.6
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 2.8e-56 222.6 182 61.0
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 3.6e-56 222.2 185 61.1
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 3.6e-56 222.2 182 61.5
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 3.6e-56 222.2 181 59.7
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 3.6e-56 222.2 179 60.9
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 3.6e-56 222.2 179 62.0
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 3.6e-56 222.2 182 60.4
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 3.6e-56 222.2 179 59.2
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 4.7e-56 221.9 179 60.9
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 4.7e-56 221.9 182 58.8
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 6.2e-56 221.5 179 62.0
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 6.2e-56 221.5 179 62.0
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 8.1e-56 221.1 182 61.0
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 1.1e-55 220.7 179 59.2
CsaV3_UNG147160 Cucumis sativus L. HOM05D000141 ORTHO05D004489 1.1e-55 220.7 178 60.1
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 1.8e-55 219.9 182 58.8
Nitab4.5_0000973g0040 Nicotiana tabacum HOM05D000141 ORTHO05D004489 1.8e-55 219.9 182 59.3
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 1.8e-55 219.9 182 58.8
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 1.8e-55 219.9 182 58.8
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 2.3e-55 219.5 183 58.5
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 4.0e-55 218.8 182 58.8
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 4.0e-55 218.8 182 58.2
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 5.2e-55 218.4 179 58.1
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 6.8e-55 218.0 182 60.4
Nitab4.5_0011544g0030 Nicotiana tabacum HOM05D000141 ORTHO05D004489 6.8e-55 218.0 182 58.8
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 8.9e-55 217.6 182 59.9
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 8.9e-55 217.6 179 58.7
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 1.2e-54 217.2 179 62.0
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 1.2e-54 217.2 179 59.2
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 1.5e-54 216.9 179 59.8
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 2.6e-54 216.1 182 58.8
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 5.8e-54 214.9 179 60.3
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 5.8e-54 214.9 179 60.3
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 7.5e-54 214.5 183 58.5
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 7.5e-54 214.5 183 58.5
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 9.9e-54 214.2 179 60.3
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 1.3e-53 213.8 179 58.7
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 1.3e-53 213.8 181 59.7
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 2.9e-53 212.6 179 57.0
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 4.9e-53 211.8 179 60.9
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 8.3e-53 211.1 179 57.0
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.1e-52 210.7 182 58.2
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 2.4e-52 209.5 179 58.7
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 3.2e-52 209.1 179 59.2
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 4.1e-52 208.8 179 57.0
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 7.1e-52 208.0 179 58.7
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 7.1e-52 208.0 179 58.7
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 1.6e-51 206.8 179 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 2.1e-51 206.5 182 54.9
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 2.1e-51 206.5 179 58.1
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 2.7e-51 206.1 179 58.1
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 4.6e-51 205.3 179 57.5
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 6.0e-51 204.9 180 58.3
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 6.0e-51 204.9 180 58.3
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 2.3e-50 203.0 180 57.8
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 2.3e-50 203.0 180 57.8
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 2.3e-50 203.0 180 57.8
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 6.6e-50 201.4 184 56.5
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.2e-48 197.2 189 55.6
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 2.8e-48 196.1 179 56.4
CBR_g9092 Chara braunii HOM05D000141 ORTHO05D004489 4.7e-48 195.3 183 52.5
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 4.7e-48 195.3 182 51.1
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 6.2e-48 194.9 179 56.4
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 1.8e-47 193.4 179 56.4
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 1.8e-47 193.4 179 50.8
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 4.0e-47 192.2 178 56.2
vmacro18483 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 5.2e-47 191.8 179 54.7
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 8.9e-47 191.0 179 49.2
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 8.9e-47 191.0 179 49.2
Pp3c2_29920 Physcomitrium patens HOM05D000141 ORTHO05D004489 9.9e-46 187.6 179 52.0
Pp3c11_5890 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.3e-45 187.2 179 51.4
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.7e-45 186.8 182 48.9
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 5.6e-41 171.8 162 55.6
CBR_g8104 Chara braunii HOM05D000141 ORTHO05D004489 6.9e-39 164.9 177 48.6
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 1.5e-38 163.7 180 51.1
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 4.9e-37 158.7 112 64.3
Cre06.g278125 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D004489 1.2e-27 127.5 185 37.8
Sed0022500 Sechium edule HOM05D000141 ORTHO05D004489 8.7e-26 121.3 103 57.3
PRCOL_00006273 Prasinoderma coloniale HOM05D000141 ORTHO05D004489 3.3e-25 119.4 189 35.4
AUR62029523 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.4e-23 114.0 96 59.4
CSS0000553 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0012389 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0025758 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0025980 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0031452 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0033966 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0040247 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.4e-21 104.8 73 67.1
CSS0026006 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 1.4e-20 104.0 89 58.4
CSS0032073 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 2.5e-20 103.2 73 65.8
TPR.G33746 Trifolium pratense HOM05D000141 ORTHO05D004489 1.3e-18 97.4 93 51.6
Gohir.D10G107650 Gossypium hirsutum HOM05D000141 ORTHO05D036128 2.3e-18 96.7 129 44.2
MCO02G386 Micromonas commoda HOM05D000141 ORTHO05D004489 2.3e-18 96.7 132 42.4
Gorai.011G118000 Gossypium raimondii HOM05D000141 ORTHO05D036128 8.7e-18 94.7 129 43.4
Gohir.A10G068040 Gossypium hirsutum HOM05D000141 ORTHO05D036128 8.2e-16 88.2 129 40.3
Thecc.07G194700 Theobroma cacao HOM05D000141 ORTHO05D016149 1.1e-12 77.8 61 55.7
Zm00001eb433100 Zea mays HOM05D000141 ORTHO05D004489 7.4e-09 65.1 76 42.1


User provided reference genes

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