Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32494 Sapria himalayana HOM05D000141 ORTHO05D004489 2.8e-70 268.5 131 100.0
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 1.2e-17 93.6 61 73.8
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 1.8e-16 89.7 76 59.2
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 2.3e-16 89.4 76 57.9
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 2.3e-16 89.4 76 57.9
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 2.3e-16 89.4 76 57.9
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 2.3e-16 89.4 61 73.8
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 5.1e-16 88.2 76 59.2
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 5.1e-16 88.2 76 56.6
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 5.1e-16 88.2 76 59.2
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 5.1e-16 88.2 76 59.2
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 6.7e-16 87.8 76 56.6
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 8.7e-16 87.4 76 56.6
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 1.1e-15 87.0 61 70.5
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 1.5e-15 86.7 76 57.9
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 1.5e-15 86.7 60 73.3
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 1.9e-15 86.3 61 68.9
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 1.9e-15 86.3 61 70.5
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 3.3e-15 85.5 60 71.7
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 3.3e-15 85.5 60 71.7
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 3.3e-15 85.5 60 71.7
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 3.3e-15 85.5 60 71.7
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 3.3e-15 85.5 60 71.7
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 3.3e-15 85.5 60 71.7
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 4.3e-15 85.1 76 56.6
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 4.3e-15 85.1 76 56.6
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 4.3e-15 85.1 61 68.9
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 4.3e-15 85.1 60 70.0
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 4.3e-15 85.1 76 55.3
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 4.3e-15 85.1 76 56.6
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 4.3e-15 85.1 76 56.6
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 4.3e-15 85.1 60 70.0
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 4.3e-15 85.1 61 68.9
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 4.3e-15 85.1 61 68.9
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 4.3e-15 85.1 76 55.3
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 5.7e-15 84.7 72 61.1
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 5.7e-15 84.7 61 68.9
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 5.7e-15 84.7 76 56.6
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 7.4e-15 84.3 72 61.1
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 7.4e-15 84.3 61 67.2
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 7.4e-15 84.3 61 67.2
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 7.4e-15 84.3 61 67.2
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 7.4e-15 84.3 61 68.9
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 7.4e-15 84.3 62 69.4
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 7.4e-15 84.3 61 68.9
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 9.6e-15 84.0 61 67.2
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 9.6e-15 84.0 61 67.2
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 9.6e-15 84.0 60 68.3
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 1.3e-14 83.6 72 59.7
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 1.3e-14 83.6 61 67.2
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 1.3e-14 83.6 61 65.6
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 1.6e-14 83.2 61 65.6
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 1.6e-14 83.2 61 65.6
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 1.6e-14 83.2 61 67.2
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 1.6e-14 83.2 61 67.2
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 1.6e-14 83.2 76 55.3
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 2.1e-14 82.8 61 65.6
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 2.1e-14 82.8 76 53.9
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 2.1e-14 82.8 60 68.3
Hund19673 Selenicereus undatus HOM05D000141 ORTHO05D004489 2.1e-14 82.8 74 56.8
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 2.8e-14 82.4 61 68.9
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 2.8e-14 82.4 61 67.2
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 2.8e-14 82.4 61 67.2
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 2.8e-14 82.4 61 67.2
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 2.8e-14 82.4 66 62.1
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 2.8e-14 82.4 61 65.6
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 2.8e-14 82.4 61 65.6
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 2.8e-14 82.4 76 53.9
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 3.7e-14 82.0 72 59.7
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 3.7e-14 82.0 72 59.7
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 3.7e-14 82.0 61 67.2
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 3.7e-14 82.0 76 52.6
Psat2g033360 Pisum sativum HOM05D000141 ORTHO05D004489 6.3e-14 81.3 76 55.3
TPR.G33741 Trifolium pratense HOM05D000141 ORTHO05D004489 6.3e-14 81.3 76 55.3
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 8.2e-14 80.9 61 62.3
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 8.2e-14 80.9 61 65.6
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 8.2e-14 80.9 60 63.3
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 8.2e-14 80.9 60 66.7
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 8.2e-14 80.9 62 66.1
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 1.1e-13 80.5 60 65.0
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 1.1e-13 80.5 61 65.6
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 1.1e-13 80.5 76 55.3
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 1.1e-13 80.5 66 60.6
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 1.1e-13 80.5 60 63.3
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 1.1e-13 80.5 76 55.3
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 1.4e-13 80.1 60 65.0
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 1.4e-13 80.1 61 63.9
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 1.8e-13 79.7 72 58.3
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 1.8e-13 79.7 66 62.1
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 2.4e-13 79.3 61 63.9
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 2.4e-13 79.3 61 65.6
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 2.4e-13 79.3 61 67.2
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 3.1e-13 79.0 61 68.9
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 3.1e-13 79.0 76 56.6
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 4.1e-13 78.6 61 60.7
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 4.1e-13 78.6 61 63.9
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 6.9e-13 77.8 76 50.0
Ca_25026_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 9.0e-13 77.4 61 62.3
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 9.0e-13 77.4 57 66.7
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 1.2e-12 77.0 63 65.1
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 1.5e-12 76.6 60 61.7
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 4.5e-12 75.1 67 62.7
Nitab4.5_0017516g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 5.9e-12 74.7 57 63.2
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 5.9e-12 74.7 51 70.6
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 7.6e-12 74.3 61 62.3
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 1.3e-11 73.6 67 62.7
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 1.3e-11 73.6 57 63.2
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 1.3e-11 73.6 57 63.2
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 1.7e-11 73.2 68 58.8
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 1.7e-11 73.2 68 58.8
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 1.7e-11 73.2 60 61.7
Nitab4.5_0028853g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 2.2e-11 72.8 57 61.4
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 2.9e-11 72.4 61 60.7
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 6.5e-11 71.2 68 57.4
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 6.5e-11 71.2 68 57.4
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 6.5e-11 71.2 57 61.4
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 6.5e-11 71.2 57 61.4
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 6.5e-11 71.2 57 61.4
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 8.4e-11 70.9 57 59.6
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 1.1e-10 70.5 68 55.9
Psat6g138520 Pisum sativum HOM05D000141 ORTHO05D004489 7.9e-09 64.3 50 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 3.9e-08 62.0 62 45.2
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 5.1e-08 61.6 57 47.4
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 5.1e-08 61.6 57 47.4
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 8.7e-08 60.8 44 65.9
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 5.7e-07 58.2 57 47.4
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.6e-06 56.6 57 43.9
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 2.8e-06 55.8 62 46.8


User provided reference genes

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