Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.7e-128 460.7 230 100.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-40 170.6 253 44.7
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 8.3e-38 161.4 187 51.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-33 146.0 167 53.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.1e-32 144.4 223 43.0
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.6e-31 138.3 249 39.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.3e-30 137.5 249 39.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.3e-30 137.5 249 39.0
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 5.4e-29 132.1 249 38.2
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-29 131.7 245 38.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-29 131.7 245 38.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-29 131.7 245 38.4
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 7.1e-29 131.7 245 38.4
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.6e-28 130.6 162 48.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.1e-28 130.2 163 49.1
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-28 130.2 163 49.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-28 130.2 163 49.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-28 130.2 173 44.5
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 3.5e-28 129.4 160 50.6
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 3.5e-28 129.4 160 50.6
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 3.5e-28 129.4 160 50.6
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 3.5e-28 129.4 160 50.6
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 3.5e-28 129.4 160 50.6
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 3.5e-28 129.4 160 50.6
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 7.8e-28 128.3 163 48.5
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.8e-28 128.3 163 48.5
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 7.8e-28 128.3 163 48.5
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 7.8e-28 128.3 163 48.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.7e-27 127.1 164 48.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.7e-27 127.1 163 48.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-27 127.1 163 47.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.3e-27 126.7 273 37.4
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.9e-27 125.9 177 45.2
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 5.1e-27 125.6 163 47.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.1e-27 125.6 163 47.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 6.6e-27 125.2 212 42.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.6e-27 125.2 163 48.5
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.6e-27 125.2 163 48.5
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.6e-27 125.2 163 48.5
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.6e-27 125.2 163 48.5
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.6e-27 125.2 163 47.9
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.7e-27 124.8 164 48.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 8.7e-27 124.8 163 48.5
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.5e-26 124.0 163 47.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.9e-26 123.6 157 48.4
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.9e-26 123.6 163 47.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.5e-26 123.2 163 47.9
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.5e-26 123.2 163 47.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.3e-26 122.9 191 43.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.3e-26 121.7 163 47.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.6e-26 121.3 163 47.2
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.1e-25 120.2 181 44.8
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.1e-25 120.2 181 44.8
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.1e-25 120.2 164 47.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.6e-25 119.4 348 31.6
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.8e-25 119.0 218 38.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.1e-25 118.2 163 45.4
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.8e-24 117.1 98 65.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 3.1e-24 116.3 163 45.4
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 3.1e-24 116.3 163 46.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.3e-24 115.5 98 64.3
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 9.0e-24 114.8 90 67.8
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 9.9e-23 111.3 98 62.2
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.9e-22 109.8 99 59.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 3.8e-22 109.4 96 61.5
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.4e-22 108.6 108 58.3
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.1e-21 107.8 76 71.1
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 4.2e-21 105.9 84 66.7
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 7.8e-20 101.7 138 44.9
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.1e-19 99.0 203 39.4
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 6.6e-19 98.6 73 68.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.3e-18 95.9 73 65.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.6e-18 95.5 155 41.9
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 9.6e-18 94.7 65 72.3
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.8e-17 93.2 91 56.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-15 87.4 146 40.4
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 5.8e-15 85.5 70 67.1
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.8e-14 82.8 64 67.2
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.4e-14 82.0 59 71.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.4e-14 82.0 59 71.2
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.6e-12 75.9 92 51.1
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.8e-11 73.9 119 41.2
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 1.6e-09 67.4 60 56.7
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-09 67.4 42 76.2
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-09 67.4 63 60.3
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 1.6e-09 67.4 38 84.2
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-08 62.4 113 38.1
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-08 62.4 113 38.1
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-07 60.8 119 36.1
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.0e-07 60.5 62 56.5
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 4.5e-07 59.3 56 55.4
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 4.5e-07 59.3 119 35.3
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-06 57.0 110 37.3
SHI11507 Sapria himalayana HOM05D003783 ORTHO05D364673 2.2e-06 57.0 110 40.9
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.9e-06 56.6 54 61.1
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.4e-06 55.5 39 71.8


User provided reference genes

Program Settings