Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 2.7e-143 511.9 247 100.0
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.7e-77 291.6 203 68.5
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-75 287.3 227 64.3
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-75 287.3 212 67.0
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.6e-74 283.5 227 63.4
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 7.8e-74 281.2 219 63.5
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 5.0e-73 278.5 220 65.0
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.0e-73 278.5 218 64.2
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.5e-72 276.9 227 62.1
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.9e-72 276.6 224 63.8
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.5e-72 276.2 224 61.6
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 3.3e-72 275.8 226 62.4
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 5.6e-72 275.0 226 62.8
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 5.6e-72 275.0 224 63.8
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.3e-72 274.6 227 62.6
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 7.3e-72 274.6 215 64.2
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 9.5e-72 274.2 224 61.6
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.2e-71 273.9 224 61.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.8e-71 272.7 224 61.2
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.8e-71 272.7 224 61.2
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 6.1e-71 271.6 224 62.5
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 8.0e-71 271.2 224 62.1
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.0e-70 270.8 217 63.1
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-70 270.8 217 63.1
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 6.8e-70 268.1 174 74.1
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.6e-69 266.2 209 64.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 7.5e-69 264.6 224 60.3
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-68 263.8 224 59.4
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.3e-68 263.8 224 58.9
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 2.9e-68 262.7 216 62.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 3.7e-68 262.3 218 58.7
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 3.7e-68 262.3 224 60.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.7e-68 262.3 224 59.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 4.9e-68 261.9 190 69.5
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 6.4e-68 261.5 229 59.0
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 6.4e-68 261.5 224 59.8
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 6.4e-68 261.5 224 59.4
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 6.4e-68 261.5 224 58.9
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 8.3e-68 261.2 227 58.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 8.3e-68 261.2 224 58.0
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 8.3e-68 261.2 217 62.7
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.1e-67 260.8 224 58.5
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 3.2e-67 259.2 224 59.4
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 4.1e-67 258.8 219 59.4
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 4.1e-67 258.8 219 58.9
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 7.0e-67 258.1 227 57.3
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 9.2e-67 257.7 227 57.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-66 257.3 253 54.2
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.6e-66 256.9 227 56.8
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.0e-66 256.5 222 57.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.7e-66 256.1 220 58.6
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 2.7e-66 256.1 224 58.0
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.5e-66 255.8 224 57.1
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.6e-66 255.4 224 57.1
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 4.6e-66 255.4 224 57.6
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.0e-65 254.2 224 56.7
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.0e-65 254.2 224 58.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-65 253.8 224 56.2
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.3e-65 253.8 222 56.8
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-65 253.4 224 56.2
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 2.3e-65 253.1 219 60.3
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.3e-65 253.1 224 58.9
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 3.9e-65 252.3 228 56.1
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 3.9e-65 252.3 222 56.8
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.9e-65 252.3 224 55.8
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 6.6e-65 251.5 222 55.9
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 6.6e-65 251.5 225 56.4
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 6.6e-65 251.5 225 56.4
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 8.6e-65 251.1 230 57.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 8.6e-65 251.1 222 55.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 8.6e-65 251.1 224 57.1
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-64 250.8 224 55.4
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.1e-64 250.8 214 60.3
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.1e-64 250.8 214 60.3
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-64 250.4 225 56.4
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.9e-64 250.0 225 57.8
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.9e-64 250.0 225 57.8
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.5e-64 249.6 224 55.8
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 2.5e-64 249.6 224 55.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 3.3e-64 249.2 217 59.4
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.3e-64 248.8 224 55.8
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 4.3e-64 248.8 224 57.1
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 7.3e-64 248.1 223 59.2
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 7.3e-64 248.1 176 67.0
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 7.3e-64 248.1 221 57.5
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 9.5e-64 247.7 223 59.2
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.2e-63 247.3 219 57.1
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.6e-63 246.9 224 56.2
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.8e-63 246.1 215 59.5
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.6e-63 245.7 224 55.8
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 4.7e-63 245.4 222 56.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.7e-63 245.4 214 59.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 4.7e-63 245.4 224 56.7
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 6.2e-63 245.0 232 54.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 8.1e-63 244.6 215 59.5
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.1e-62 244.2 224 56.2
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.4e-62 243.8 224 55.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.8e-62 243.4 224 55.4
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.8e-62 243.4 176 68.8
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.8e-62 243.4 224 55.4
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.8e-62 243.4 224 57.1
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.3e-62 243.0 219 57.5
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 3.1e-62 242.7 219 56.2
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 4.0e-62 242.3 238 54.6
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 5.2e-62 241.9 219 55.3
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 6.8e-62 241.5 176 67.0
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.9e-62 241.1 176 66.5
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.2e-61 240.7 219 54.8
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.5e-61 240.4 218 55.5
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.0e-61 240.0 176 65.9
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.4e-61 238.8 213 56.8
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 4.4e-61 238.8 219 55.3
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-60 236.9 224 54.5
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 6.4e-60 235.0 223 56.5
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 6.4e-60 235.0 202 57.4
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 8.3e-60 234.6 219 53.9
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-58 230.3 204 56.4
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.3e-57 227.3 201 57.2
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-57 226.9 207 55.6
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-57 226.9 200 57.5
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.7e-57 226.9 207 55.6
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.7e-57 226.9 200 57.0
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 2.3e-57 226.5 163 66.3
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.0e-57 226.1 204 55.9
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 6.6e-57 224.9 202 57.9
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 2.5e-56 223.0 170 64.7
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.5e-56 223.0 211 55.0
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.3e-56 221.5 211 53.6
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 4.7e-55 218.8 201 55.7
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.3e-54 216.5 202 53.5
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 2.6e-53 213.0 158 65.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 7.6e-53 211.5 212 52.4
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 7.6e-53 211.5 203 51.2
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 9.9e-53 211.1 222 53.6
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.4e-51 207.2 133 70.7
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.2e-50 204.1 181 59.1
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 3.3e-48 196.1 173 58.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 5.6e-48 195.3 148 64.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.6e-47 193.7 214 48.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.1e-46 189.5 173 55.5
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 2.6e-45 186.4 210 47.6
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.7e-44 183.7 219 49.3
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.2e-43 179.5 231 46.3
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 4.2e-43 179.1 210 47.1
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.1e-42 176.8 197 52.3
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.0e-41 174.5 218 46.3
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.5e-40 170.6 228 42.5
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.6e-40 168.7 214 43.0
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 2.1e-39 166.8 211 45.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 2.8e-39 166.4 202 48.0
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.8e-39 165.6 230 42.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 9.9e-37 157.9 168 48.8
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-36 157.5 157 54.8
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.7e-36 157.1 158 53.2
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 6.0e-34 148.7 128 60.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 4.8e-31 139.0 155 49.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.1e-30 137.9 213 39.4
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 5.3e-30 135.6 186 46.2
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-30 135.2 190 42.1
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 9.0e-30 134.8 219 39.7
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.0e-29 133.7 154 44.2
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.1e-25 119.0 94 62.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 9.6e-24 114.8 94 60.6
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 8.1e-23 111.7 85 61.2
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.1e-22 109.8 109 49.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 5.3e-22 109.0 115 55.7
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.9e-19 100.5 102 49.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 4.2e-19 99.4 77 61.0
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 7.1e-19 98.6 63 73.0
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.3e-19 98.2 154 35.1
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.2e-11 73.2 85 45.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.3e-07 61.2 141 30.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.1e-06 58.2 64 51.6
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.8e-06 57.4 40 60.0


User provided reference genes

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