Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 9.9e-86 320.1 163 100.0
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 4.5e-38 161.8 91 86.8
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 3.8e-37 158.7 91 84.6
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 5.0e-37 158.3 91 86.8
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.5e-36 156.8 91 84.6
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 1.9e-36 156.4 91 82.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.9e-36 156.4 91 83.5
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.9e-36 156.4 91 84.6
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.5e-36 156.0 92 84.8
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 2.5e-36 156.0 92 84.8
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.5e-36 156.0 91 82.4
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 3.2e-36 155.6 91 82.4
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.2e-36 155.6 91 84.6
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 5.5e-36 154.8 91 83.5
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 7.2e-36 154.5 91 83.5
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 7.2e-36 154.5 91 83.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 7.2e-36 154.5 91 81.3
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 9.4e-36 154.1 91 82.4
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.2e-35 153.7 91 83.5
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.2e-35 153.7 91 83.5
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.2e-35 153.7 91 83.5
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.2e-35 153.7 91 83.5
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.2e-35 153.7 91 81.3
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.6e-35 153.3 91 82.4
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.6e-35 153.3 91 80.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.6e-35 153.3 91 81.3
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.1e-35 152.9 91 81.3
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.1e-35 152.9 91 81.3
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 2.1e-35 152.9 91 81.3
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 2.1e-35 152.9 91 81.3
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 2.7e-35 152.5 91 81.3
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 2.7e-35 152.5 91 82.4
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 4.7e-35 151.8 91 79.1
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 4.7e-35 151.8 91 80.2
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.7e-35 151.8 91 80.2
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.7e-35 151.8 91 80.2
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.7e-35 151.8 91 80.2
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 4.7e-35 151.8 91 81.3
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 6.1e-35 151.4 91 81.3
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.0e-35 151.0 91 78.0
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 8.0e-35 151.0 91 80.2
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.0e-34 150.6 91 80.2
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.0e-34 150.6 158 53.8
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.4e-34 150.2 90 80.0
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.4e-34 150.2 91 79.1
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.4e-34 150.2 91 81.3
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 1.4e-34 150.2 91 79.1
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.4e-34 150.2 91 79.1
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.8e-34 149.8 91 79.1
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.8e-34 149.8 91 79.1
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.3e-34 149.4 91 78.0
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.3e-34 149.4 91 80.2
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.3e-34 149.4 91 79.1
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 3.0e-34 149.1 91 80.2
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 4.0e-34 148.7 91 78.0
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 5.2e-34 148.3 92 77.2
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 6.8e-34 147.9 91 80.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 8.8e-34 147.5 91 78.0
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 8.8e-34 147.5 91 78.0
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 8.8e-34 147.5 91 78.0
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 8.8e-34 147.5 91 78.0
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.2e-33 147.1 91 78.0
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-33 147.1 91 78.0
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.2e-33 147.1 91 79.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.2e-33 147.1 91 78.0
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 78.0
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 78.0
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 78.0
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 78.0
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 76.9
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 79.1
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.5e-33 146.7 91 78.0
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.0e-33 146.4 91 76.9
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.0e-33 146.4 91 76.9
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.0e-33 146.4 91 76.9
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 2.6e-33 146.0 91 78.0
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.6e-33 146.0 91 76.9
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-33 145.6 91 76.9
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 3.4e-33 145.6 91 76.9
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.4e-33 145.2 91 76.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.4e-33 145.2 90 80.0
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.7e-33 144.8 91 75.8
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 7.5e-33 144.4 91 75.8
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 7.5e-33 144.4 91 75.8
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 9.8e-33 144.1 91 75.8
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 9.8e-33 144.1 91 76.9
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 9.8e-33 144.1 91 75.8
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.3e-32 143.7 91 75.8
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.3e-32 143.7 91 76.9
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.3e-32 143.7 91 75.8
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.7e-32 143.3 86 80.2
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.7e-32 143.3 91 76.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.2e-32 142.9 91 74.7
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-32 142.9 91 75.8
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.2e-32 142.9 91 75.8
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.2e-32 142.9 91 74.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.2e-32 142.9 91 76.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.2e-32 142.9 91 76.9
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.8e-32 142.5 91 74.7
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.8e-32 142.5 91 76.9
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 2.8e-32 142.5 91 76.9
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.7e-32 142.1 91 74.7
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.7e-32 142.1 91 74.7
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.8e-32 141.7 91 74.7
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 4.8e-32 141.7 91 76.9
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 6.3e-32 141.4 91 75.8
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.1e-31 140.6 91 74.7
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.4e-31 140.2 91 75.8
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 3.1e-31 139.0 91 72.5
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 9.1e-31 137.5 90 73.3
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 1.2e-30 137.1 91 73.6
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 7.7e-30 134.4 91 68.1
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.0e-29 134.0 91 69.2
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.8e-29 132.1 95 63.2
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 8.6e-29 131.0 95 62.1
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.9e-28 129.8 74 87.8
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.4e-26 123.6 91 68.1
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 9.8e-25 117.5 72 77.8
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.5e-22 108.6 89 60.7
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 3.9e-21 105.5 91 57.1
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.1e-20 104.0 91 57.1
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.1e-20 104.0 91 57.1
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.8e-18 96.7 59 76.3
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.3e-16 90.5 61 70.5
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.4e-15 85.1 91 53.8
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.2e-14 84.0 59 72.9
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 3.5e-14 82.4 89 46.1
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 5.6e-12 75.1 45 77.8
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 7.3e-12 74.7 45 77.8
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 7.3e-12 74.7 45 77.8
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.2e-11 71.6 45 75.6
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.2e-11 71.6 45 75.6
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 8.0e-11 71.2 45 73.3
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-10 70.9 45 75.6
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.8e-10 70.1 44 75.0
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-10 70.1 44 75.0
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 4.0e-10 68.9 45 71.1
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 5.2e-10 68.6 87 39.1
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 4.4e-09 65.5 45 68.9


User provided reference genes

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