Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31861 Sapria himalayana HOM05D006520 ORTHO05D008405 4.8e-205 717.6 368 100.0
Dinv22290 Davidia involucrata HOM05D006520 ORTHO05D008405 7.6e-118 427.9 356 65.7
Prupe.4G205700 Prunus persica HOM05D006520 ORTHO05D008405 2.7e-115 419.5 373 62.5
MD03G1209400 Malus domestica HOM05D006520 ORTHO05D008405 1.4e-114 417.2 366 63.1
TWI38G0825 Tripterygium wilfordii HOM05D006520 ORTHO05D008405 1.1e-113 414.1 364 64.3
Ciclev10008777m.g Citrus clementina HOM05D006520 ORTHO05D008405 1.9e-113 413.3 355 63.9
GSVIVG01001984001 Vitis vinifera HOM05D006520 ORTHO05D008405 3.3e-113 412.5 363 63.1
QL08p012619 Quercus lobata HOM05D006520 ORTHO05D008405 7.4e-113 411.4 380 61.1
Duzib213G0852 Durio zibethinus HOM05D006520 ORTHO05D008405 1.7e-112 410.2 365 63.6
TAR362G1255 Trochodendron aralioides HOM05D006520 ORTHO05D008405 1.1e-111 407.5 358 61.7
RcHm_v2.0_Chr5g0037851 Rosa chinensis HOM05D006520 ORTHO05D008405 1.4e-111 407.1 355 62.5
CSS0025953 Camellia sinensis var. sinensis HOM05D006520 ORTHO05D008405 1.8e-111 406.8 355 63.7
Nn3g21422 Nelumbo nucifera HOM05D006520 ORTHO05D008405 1.8e-111 406.8 358 62.3
Potri.011G135600 Populus trichocarpa HOM05D006520 ORTHO05D008405 3.1e-111 406.0 364 62.4
COL.COLO4_09604 Corchorus olitorius HOM05D006520 ORTHO05D008405 5.3e-111 405.2 373 61.9
CiPaw.11G185500 Carya illinoinensis HOM05D006520 ORTHO05D008405 6.9e-111 404.8 354 63.3
Eucgr.F00972 Eucalyptus grandis HOM05D006520 ORTHO05D008405 1.2e-110 404.1 358 62.3
Cpa.g.sc1133.1 Carica papaya HOM05D006520 ORTHO05D008405 2.0e-110 403.3 371 61.5
vmacro11755 Vaccinium macrocarpon HOM05D006520 ORTHO05D008405 2.0e-110 403.3 355 63.7
Thecc.07G046500 Theobroma cacao HOM05D006520 ORTHO05D008405 2.6e-110 402.9 353 63.7
Nitab4.5_0000653g0110 Nicotiana tabacum HOM05D006520 ORTHO05D008405 3.4e-110 402.5 356 62.4
Atru.chr2.3238 Acer truncatum HOM05D006520 ORTHO05D008405 4.5e-110 402.1 360 61.1
FvH4_3g22000 Fragaria vesca HOM05D006520 ORTHO05D008405 7.7e-110 401.4 355 61.7
EL10Ac4g07934 Beta vulgaris HOM05D006520 ORTHO05D008405 1.3e-109 400.6 335 63.6
Cfa020400 Carpinus fangiana HOM05D006520 ORTHO05D008405 1.3e-109 400.6 358 61.2
FAN16G1768 Fragaria x ananassa HOM05D006520 ORTHO05D008405 1.3e-109 400.6 355 61.4
FAN21G1190 Fragaria x ananassa HOM05D006520 ORTHO05D008405 1.3e-109 400.6 355 61.7
Lj8A167T45 Lonicera japonica HOM05D006520 ORTHO05D008405 1.3e-109 400.6 357 61.3
Manes.15G075200 Manihot esculenta HOM05D006520 ORTHO05D008405 1.7e-109 400.2 303 69.0
PSO832G0135 Papaver somniferum HOM05D006520 ORTHO05D008405 1.7e-109 400.2 362 60.8
Lalb_Chr03g0030081 Lupinus albus HOM05D006520 ORTHO05D008405 3.8e-109 399.1 373 59.8
Sed0027741 Sechium edule HOM05D006520 ORTHO05D008405 8.5e-109 397.9 354 62.4
Nitab4.5_0004600g0010 Nicotiana tabacum HOM05D006520 ORTHO05D008405 1.1e-108 397.5 356 61.8
PSO210G5695 Papaver somniferum HOM05D006520 ORTHO05D008405 1.1e-108 397.5 362 60.5
Oeu021407.1 Olea europaea HOM05D006520 ORTHO05D008405 1.9e-108 396.7 357 61.9
Aqoxy5G00708 Aquilegia oxysepala HOM05D006520 ORTHO05D008405 2.5e-108 396.4 358 60.9
Gohir.A01G076200 Gossypium hirsutum HOM05D006520 ORTHO05D008405 2.5e-108 396.4 366 61.2
Gorai.002G084200 Gossypium raimondii HOM05D006520 ORTHO05D008405 2.5e-108 396.4 366 61.2
PGR083G2407 Punica granatum HOM05D006520 ORTHO05D008405 2.5e-108 396.4 356 60.7
THA.LOC104817880 Tarenaya hassleriana HOM05D006520 ORTHO05D008405 7.2e-108 394.8 357 61.1
Solyc12g005200.3 Solanum lycopersicum HOM05D006520 ORTHO05D008405 9.4e-108 394.4 356 60.4
Cc05_g13380 Coffea canephora HOM05D006520 ORTHO05D008405 1.6e-107 393.7 356 61.0
CANSAT35G1182 Cannabis sativa HOM05D006520 ORTHO05D008405 2.1e-107 393.3 364 61.3
CAN.G315.8 Capsicum annuum HOM05D006520 ORTHO05D008405 2.1e-107 393.3 356 60.1
Haze_09634 Corylus avellana HOM05D006520 ORTHO05D008405 2.1e-107 393.3 374 59.9
PGSC0003DMG400001100 Solanum tuberosum HOM05D006520 ORTHO05D008405 2.1e-107 393.3 356 60.4
Sopen12g001190 Solanum pennellii HOM05D006520 ORTHO05D008405 7.9e-107 391.3 356 60.4
Medtr4g080790 Medicago truncatula HOM05D006520 ORTHO05D008405 1.0e-106 391.0 364 61.3
Glyma.06G270300 Glycine max HOM05D006520 ORTHO05D008405 1.4e-106 390.6 355 61.4
AUR62043225 Chenopodium quinoa HOM05D006520 ORTHO05D008405 1.8e-106 390.2 356 59.3
Actinidia09928 Actinidia chinensis HOM05D006520 ORTHO05D008405 5.1e-106 388.7 295 69.2
Peaxi162Scf01097g00110 Petunia axillaris HOM05D006520 ORTHO05D008405 5.1e-106 388.7 356 60.4
Sc16g0006360 Simmondsia chinensis HOM05D006520 ORTHO05D008405 6.7e-106 388.3 358 60.6
Thhalv10011599m.g Eutrema salsugineum HOM05D006520 ORTHO05D008405 1.1e-105 387.5 358 59.8
HanXRQChr08g0234071 Helianthus annuus HOM05D006520 ORTHO05D008405 1.1e-105 387.5 356 61.0
SGA_v2.0_scaffold258G45796 Striga asiatica HOM05D006520 ORTHO05D008405 1.5e-105 387.1 357 61.3
Ca_18859_v3 Cicer arietinum L. HOM05D006520 ORTHO05D008405 2.0e-105 386.7 357 61.6
ECA246G0715 Erigeron canadensis HOM05D006520 ORTHO05D008405 2.0e-105 386.7 375 58.1
DCAR_010030 Daucus carota HOM05D006520 ORTHO05D008405 2.6e-105 386.3 357 59.1
AUR62020529 Chenopodium quinoa HOM05D006520 ORTHO05D008405 3.3e-105 386.0 369 57.7
Lj3g0004956 Lotus japonicus HOM05D006520 ORTHO05D008405 3.3e-105 386.0 363 59.5
CsaV3_3G023150 Cucumis sativus L. HOM05D006520 ORTHO05D008405 4.4e-105 385.6 371 59.6
Hund18268 Selenicereus undatus HOM05D006520 ORTHO05D008405 7.4e-105 384.8 358 59.2
Ah.06g182970 Amaranthus hybridus HOM05D006520 ORTHO05D008405 1.7e-104 383.6 357 59.1
AL1G58660 Arabidopsis lyrata HOM05D006520 ORTHO05D008405 1.7e-104 383.6 358 58.9
Phvul.011G139475 Phaseolus vulgaris HOM05D006520 ORTHO05D008405 1.7e-104 383.6 355 61.1
ATR0706G183 Amborella trichopoda HOM05D006520 ORTHO05D008405 2.2e-104 383.3 366 58.7
AT1G50940 Arabidopsis thaliana HOM05D006520 ORTHO05D008405 3.7e-104 382.5 358 58.7
arahy.Tifrunner.gnm1.ann1.45MNV2 Arachis hypogaea HOM05D006520 ORTHO05D008405 6.3e-104 381.7 366 59.3
TPR.G25908 Trifolium pratense HOM05D006520 ORTHO05D008405 1.4e-103 380.6 294 69.0
Sabra11G0121700 Salix brachista HOM05D006520 ORTHO05D008405 7.0e-103 378.3 401 56.1
MELO3C018098.2 Cucumis melo HOM05D006520 ORTHO05D008405 1.5e-102 377.1 371 58.2
Sabra11G0121400 Salix brachista HOM05D006520 ORTHO05D008405 1.5e-102 377.1 401 56.1
Aa31LG10G3340 Aethionema arabicum HOM05D006520 ORTHO05D008405 2.6e-102 376.3 381 56.4
Lsat_1_v5_gn_7_65980 Lactuca sativa HOM05D006520 ORTHO05D008405 2.6e-102 376.3 379 57.0
Carub.0001s3988 Capsella rubella HOM05D006520 ORTHO05D008405 5.9e-102 375.2 358 58.7
VMungo1127G1053 Vigna mungo HOM05D006520 ORTHO05D008405 5.9e-102 375.2 355 60.0
C03p89710 Brassica napus HOM05D006520 ORTHO05D008405 1.3e-101 374.0 358 57.8
Sp1g37680 Schrenkiella parvula HOM05D006520 ORTHO05D008405 1.3e-101 374.0 357 58.8
CARHR040980 Cardamine hirsuta HOM05D006520 ORTHO05D008405 2.2e-101 373.2 358 57.8
A08p03100 Brassica napus HOM05D006520 ORTHO05D008405 2.9e-101 372.9 373 56.6
BcaB04g17242 Brassica carinata HOM05D006520 ORTHO05D008405 3.8e-101 372.5 359 57.7
BraA08t32341Z Brassica rapa HOM05D006520 ORTHO05D008405 1.1e-100 370.9 373 56.3
Migut.M01795 Erythranthe guttata HOM05D006520 ORTHO05D008405 1.1e-100 370.9 360 58.1
BcaC01g01246 Brassica carinata HOM05D006520 ORTHO05D008405 1.9e-100 370.2 381 55.4
BolC3t21294H Brassica oleracea HOM05D006520 ORTHO05D008405 1.9e-100 370.2 381 55.4
ClCG05G014620 Citrullus lanatus HOM05D006520 ORTHO05D008405 1.6e-99 367.1 373 56.8
Os03g0835400 Oryza sativa ssp. japonica HOM05D006520 ORTHO05D008405 3.6e-99 365.9 356 57.9
Psat7g163040 Pisum sativum HOM05D006520 ORTHO05D008405 5.2e-98 362.1 366 59.0
HPP92_026253 Vanilla planifolia HOM05D006520 ORTHO05D008405 5.7e-97 358.6 354 56.2
Mapoly0055s0094 Marchantia polymorpha HOM05D006520 ORTHO05D008405 4.5e-86 322.4 359 49.6
Pp3c15_18640 Physcomitrium patens HOM05D006520 ORTHO05D008405 1.6e-83 313.9 373 48.5
Gohir.D01G063700 Gossypium hirsutum HOM05D006520 ORTHO05D008405 2.8e-80 303.1 275 60.7
SMO169G0265 Selaginella moellendorffii HOM05D006520 ORTHO05D008405 1.1e-79 301.2 352 49.1
TAR362G0323 Trochodendron aralioides HOM05D000062 ORTHO05D000043 4.9e-64 249.2 298 49.7
Cre16.g687950 Chlamydomonas reinhardtii HOM05D006520 ORTHO05D008405 6.4e-64 248.8 371 42.6
CiPaw.11G185700 Carya illinoinensis HOM05D006520 ORTHO05D008405 1.9e-63 247.3 257 54.9
SalBow6G5624 Salvia bowleyana HOM05D006520 ORTHO05D008405 1.6e-62 244.2 243 56.0
Zm00001eb063680 Zea mays HOM05D006520 ORTHO05D008405 6.8e-58 228.8 241 52.7
PRCOL_00001901 Prasinoderma coloniale HOM05D006520 ORTHO05D008405 4.4e-57 226.1 287 48.1
CDE01G0592 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 7.5e-57 225.3 253 54.5
Haze_27296 Corylus avellana HOM05D006520 ORTHO05D008405 4.9e-56 222.6 359 40.7
CsaV3_3G025180 Cucumis sativus L. HOM05D006520 ORTHO05D008405 4.7e-51 206.1 169 66.9
Cfa027367 Carpinus fangiana HOM05D006520 ORTHO05D008405 8.3e-48 195.3 358 36.9
CsaV3_UNG094710 Cucumis sativus L. HOM05D006520 ORTHO05D008405 1.9e-47 194.1 210 56.2
arahy.Tifrunner.gnm1.ann1.3QT6IB Arachis hypogaea HOM05D006520 ORTHO05D008405 3.2e-47 193.4 156 68.6
unitig_62.g23270 Utricularia gibba HOM05D006520 ORTHO05D008405 2.6e-41 173.7 182 53.8
CsaV3_3G025190 Cucumis sativus L. HOM05D006520 ORTHO05D008405 7.6e-41 172.2 194 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3593 Anthoceros agrestis HOM05D006520 ORTHO05D008405 1.1e-36 158.3 179 50.8
Haze_27029 Corylus avellana HOM05D006520 ORTHO05D008405 1.1e-34 151.8 259 40.5
Glyma.12G134400 Glycine max HOM05D006520 ORTHO05D008405 4.6e-30 136.3 140 54.3
SEGI_31254 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 1.3e-27 128.3 116 63.8
SEGI_24363 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 8.1e-27 125.6 134 50.0
Pp3c15_18800 Physcomitrium patens HOM05D006520 ORTHO05D008405 2.2e-24 117.5 133 50.4
CsaV3_UNG094720 Cucumis sativus L. HOM05D006520 ORTHO05D008405 1.5e-20 104.8 71 69.0
unitig_62.g23271 Utricularia gibba HOM05D006520 ORTHO05D008405 1.1e-18 98.6 66 77.3
SEGI_23300 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 1.5e-17 94.7 88 54.5
CDE01G0120 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 1.4e-15 88.2 86 58.1
EL10Ac4g08085 Beta vulgaris HOM05D006520 ORTHO05D090166 3.7e-11 73.6 59 66.1
MD11G1224100 Malus domestica HOM05D006520 ORTHO05D008405 2.7e-06 57.4 71 49.3


User provided reference genes

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