Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.3e-158 563.1 293 100.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 8.8e-62 241.5 254 54.7
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.0e-61 240.4 288 53.1
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.0e-61 240.4 254 54.7
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 3.3e-61 239.6 262 55.3
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 7.4e-61 238.4 253 55.7
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 9.7e-61 238.0 253 54.9
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 3.7e-60 236.1 254 57.5
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.8e-60 235.7 254 55.1
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.1e-59 234.6 251 54.2
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.8e-59 233.8 251 53.0
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 3.1e-59 233.0 278 52.2
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.1e-59 232.6 251 53.0
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 5.3e-59 232.3 252 53.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.2e-58 231.1 280 48.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.2e-58 231.1 259 54.1
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.0e-58 230.3 263 53.2
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 2.6e-58 229.9 253 54.2
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 7.7e-58 228.4 266 53.4
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.3e-57 227.6 296 50.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.2e-57 226.9 251 52.6
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 5.0e-57 225.7 250 54.0
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 5.0e-57 225.7 265 51.7
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 8.5e-57 224.9 256 52.0
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.1e-56 224.6 251 56.2
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.4e-56 224.2 250 52.0
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.4e-56 224.2 258 51.6
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 2.5e-56 223.4 255 53.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 4.2e-56 222.6 249 51.4
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 4.2e-56 222.6 253 53.4
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 5.5e-56 222.2 255 52.2
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 5.5e-56 222.2 255 53.3
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 5.5e-56 222.2 266 50.0
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 9.4e-56 221.5 259 52.1
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.2e-55 221.1 259 50.6
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 1.6e-55 220.7 208 58.2
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.1e-55 220.3 252 50.8
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.7e-55 219.9 254 51.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.0e-55 218.4 261 52.5
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.0e-54 218.0 247 53.8
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.0e-54 218.0 247 53.8
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.0e-54 218.0 272 46.7
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.3e-54 216.9 265 52.1
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.3e-54 216.9 254 51.6
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.0e-54 216.5 265 49.8
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.0e-54 216.5 278 49.6
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.9e-54 216.1 279 48.7
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.9e-54 216.1 267 51.3
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 5.2e-54 215.7 264 49.6
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 6.7e-54 215.3 259 47.1
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 6.7e-54 215.3 251 51.0
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.5e-53 214.2 263 47.1
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 2.6e-53 213.4 254 48.8
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.6e-53 213.4 213 56.8
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.3e-53 213.0 222 56.3
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.3e-53 213.0 248 51.6
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 4.4e-53 212.6 285 47.4
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.4e-53 212.6 278 48.2
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 5.7e-53 212.2 278 47.1
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 9.7e-53 211.5 251 51.4
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.3e-52 211.1 267 47.9
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 2.2e-52 210.3 249 50.2
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.2e-52 210.3 262 50.0
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.3e-52 208.8 254 50.0
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.8e-51 207.2 267 50.2
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.4e-51 206.8 242 54.1
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 3.1e-51 206.5 257 45.5
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.6e-50 204.1 246 50.0
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.0e-50 203.8 238 49.6
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.6e-50 203.4 248 50.0
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 5.9e-50 202.2 251 48.6
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.0e-49 201.4 284 45.4
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.0e-49 201.4 253 46.6
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.2e-49 200.3 284 46.1
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 3.8e-49 199.5 282 45.0
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.8e-49 199.5 249 48.2
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.8e-49 199.5 281 48.0
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 5.0e-49 199.1 253 48.2
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 8.5e-49 198.4 244 50.4
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.2e-47 194.5 278 45.0
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.1e-47 193.7 254 48.4
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 2.1e-47 193.7 285 44.6
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.3e-46 190.3 278 44.6
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.6e-45 186.8 265 45.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.3e-45 186.4 252 46.4
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 5.7e-45 185.7 288 42.7
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.4e-43 180.3 245 47.8
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 2.4e-43 180.3 245 47.8
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 2.4e-43 180.3 245 47.8
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.2e-42 177.9 251 46.2
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.0e-42 177.2 254 46.9
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 2.7e-42 176.8 244 45.5
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 3.5e-42 176.4 274 44.5
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 4.5e-42 176.0 262 43.9
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.5e-42 176.0 245 42.4
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.3e-41 174.5 214 50.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.7e-41 174.1 295 42.7
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.7e-41 174.1 192 53.1
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.2e-41 173.7 256 45.3
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.1e-40 171.4 227 48.9
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.9e-40 170.6 185 54.6
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 4.2e-40 169.5 183 55.2
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.2e-40 169.5 272 41.5
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 2.7e-39 166.8 273 39.6
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.6e-39 166.4 261 44.1
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.6e-39 166.4 286 41.6
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 5.2e-38 162.5 273 38.8
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.3e-36 157.9 193 50.3
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.7e-36 157.5 255 42.7
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.8e-33 146.4 257 42.4
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 5.0e-33 146.0 257 42.0
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 8.6e-33 145.2 213 45.1
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 8.6e-33 145.2 214 40.7
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 4.2e-32 142.9 214 40.7
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.5e-32 142.5 244 38.5
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 3.6e-31 139.8 218 39.9
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 8.0e-31 138.7 253 38.7
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 6.8e-30 135.6 184 47.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 7.5e-29 132.1 269 36.4
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 5.4e-27 125.9 169 43.8
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.5e-26 122.9 202 40.1
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 4.7e-23 112.8 144 50.0
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 4.7e-23 112.8 111 56.8
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 9.8e-21 105.1 113 50.4
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.3e-20 104.8 91 61.5
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 2.2e-20 104.0 129 48.8
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.9e-20 103.6 132 47.7
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 4.9e-20 102.8 112 50.9
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.4e-19 101.3 85 58.8
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.1e-19 99.8 118 48.3
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 4.6e-18 96.3 122 48.4
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 7.8e-18 95.5 118 45.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.3e-17 94.7 86 59.3
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.0e-17 93.6 169 42.0
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.6e-17 92.4 133 47.4
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.5e-16 91.3 109 49.5
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.5e-16 91.3 109 49.5
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.5e-16 91.3 84 54.8
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.5e-16 90.5 104 46.2
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 3.3e-16 90.1 112 48.2
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.2e-13 81.6 173 37.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-11 74.7 228 28.5
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 5.4e-11 72.8 159 35.8
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 8.6e-09 65.5 55 56.4
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 4.3e-08 63.2 211 29.4
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 2.3e-06 57.4 80 41.2
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.0e-06 56.6 49 49.0
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 5.2e-06 56.2 68 44.1


User provided reference genes

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