Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 2345.5 1217 100.0
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1259.2 1270 55.3
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1244.6 1240 57.3
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1193.7 1270 53.8
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1185.6 1280 53.0
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1159.4 1280 52.0
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1157.1 1254 51.8
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1153.7 1254 51.7
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1150.2 1279 52.2
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1149.8 1199 53.7
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1146.0 1270 51.5
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1145.2 1254 51.4
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1123.2 1260 51.2
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 1264 50.9
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1105.9 1259 50.6
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1105.9 1177 54.3
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1100.1 1260 50.3
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1095.1 1275 50.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1094.7 1259 50.3
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1092.4 1267 50.3
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1092.4 1274 50.0
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1089.7 1274 50.3
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1086.2 1268 48.6
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1085.1 1276 49.2
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1083.2 1076 56.2
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1081.6 1273 49.5
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1076.2 1249 48.8
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 8.8e-312 1073.5 1246 49.7
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 6.1e-311 1071.2 1251 50.1
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 8.7e-310 1067.4 1271 48.5
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 1.1e-307 1060.4 1245 48.5
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 4.4e-306 1055.0 1263 49.1
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 4.2e-304 1048.5 1280 48.0
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 1.6e-303 1046.6 1265 47.5
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 1.7e-302 1043.1 1267 47.5
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 5.1e-302 1041.6 1274 48.1
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 2.5e-301 1039.3 1262 47.3
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 4.3e-301 1038.5 1213 48.5
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 9.6e-301 1037.3 1270 47.3
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 1.6e-300 1036.6 1257 47.5
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 4.8e-300 1035.0 1256 48.4
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 6.9e-299 1031.2 1269 47.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.0e-298 1029.6 1188 50.5
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 4.5e-298 1028.5 1265 46.7
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 4.5e-298 1028.5 1238 48.5
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 2.9e-297 1025.8 1253 46.7
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 6.4e-297 1024.6 1257 47.2
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 7.1e-296 1021.1 1250 47.0
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 4.6e-295 1018.5 1254 47.1
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 4.6e-295 1018.5 1261 47.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 1.0e-294 1017.3 1258 48.0
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 3.9e-294 1015.4 1194 48.4
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 1.9e-293 1013.1 1236 47.6
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 3.3e-293 1012.3 1266 46.0
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 3.7e-292 1008.8 1236 47.5
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 3.7e-292 1008.8 1233 47.9
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 4.8e-292 1008.4 1253 48.3
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 5.3e-291 1005.0 1235 47.4
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 2.0e-290 1003.0 1245 47.4
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 2.6e-290 1002.7 1259 46.8
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 3.4e-290 1002.3 1254 46.4
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 1.7e-289 1000.0 1265 45.8
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 2.4e-288 996.1 1239 47.5
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 1.3e-286 990.3 1256 46.3
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.9e-285 986.5 1260 45.8
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.9e-285 986.5 1254 46.0
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 2.4e-283 979.5 1260 45.5
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 1.5e-282 976.9 1241 45.9
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 6.5e-281 971.5 1265 46.7
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 9.3e-280 967.6 1279 45.7
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 9.3e-280 967.6 1240 47.2
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 3.5e-279 965.7 1283 46.5
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.1e-278 961.8 1249 45.8
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 3.3e-277 959.1 1253 45.3
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 4.8e-276 955.3 1272 44.8
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 7.6e-274 948.0 1147 47.3
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.4e-272 943.7 883 57.0
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 5.5e-272 941.8 1235 46.6
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 5.1e-270 935.3 1240 45.7
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.5e-269 933.7 1020 52.5
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.4e-267 927.2 1237 46.4
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 1.0e-265 921.0 1230 45.1
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 1.4e-264 917.1 1183 47.1
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 1.0e-262 911.0 898 56.6
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 1.1e-261 907.5 1297 43.5
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.7e-261 905.2 1206 44.6
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 6.9e-259 898.3 1249 44.0
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 5.0e-257 892.1 1053 47.7
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.5e-256 889.8 867 56.7
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.8e-251 873.6 1200 44.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 4.7e-247 859.0 1254 43.0
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 2.3e-217 760.4 734 54.8
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 3.0e-217 760.0 990 46.1
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.1e-198 698.4 1204 38.5
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.0e-198 696.4 942 43.9
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.2e-196 690.6 1273 36.5
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.4e-195 688.0 1192 37.9
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.0e-193 681.8 974 44.3
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.5e-173 614.8 899 41.8
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.0e-161 575.5 795 42.8
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.2e-151 541.2 848 37.0
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.4e-150 538.5 556 51.3
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 5.1e-145 520.0 727 41.7
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 7.7e-141 506.1 752 38.8
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 1.8e-137 495.0 686 41.3
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.1e-123 449.1 431 57.3
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.0e-121 440.7 636 40.7
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 8.0e-106 389.8 342 60.5
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 6.8e-105 386.7 331 61.6
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.2e-103 381.7 331 61.3
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 9.2e-102 376.3 621 37.0
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.4e-94 352.4 367 54.5
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 5.1e-84 317.4 236 65.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 7.8e-77 293.5 451 35.9
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.5e-67 261.9 469 37.7
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.5e-67 261.9 665 31.0
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 8.4e-63 246.9 448 34.2
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 5.4e-62 244.2 375 40.8
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-50 205.7 340 32.6
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 3.5e-45 188.3 376 36.7
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 9.7e-43 180.3 290 40.7
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.8e-42 178.7 278 35.3
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 3.1e-41 175.3 409 33.0
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 4.2e-30 138.3 171 46.2
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 8.5e-23 114.0 325 31.7
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.4e-17 96.7 202 34.2
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.6e-16 93.2 123 42.3
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.6e-16 92.4 143 39.9
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 3.5e-16 92.0 139 41.0
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.0e-15 90.5 120 38.3
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 3.2e-14 85.5 143 37.8
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 4.1e-09 68.6 61 49.2
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.2e-08 67.0 352 25.6


User provided reference genes

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