Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 5.5e-164 580.9 286 100.0
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 7.2e-39 165.2 161 58.4
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-33 146.4 161 54.0
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-32 144.8 161 55.3
Hma1.2p1_0040F.1_g025060 Hydrangea macrophylla HOM05D003430 ORTHO05D014065 2.7e-25 120.2 87 73.6
arahy.Tifrunner.gnm1.ann1.MTT5DF Arachis hypogaea HOM05D003430 ORTHO05D014065 3.5e-25 119.8 94 70.2
arahy.Tifrunner.gnm1.ann1.FZ2FI3 Arachis hypogaea HOM05D003430 ORTHO05D014065 6.1e-22 109.0 154 48.1
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 9.1e-18 95.1 100 55.0
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.2e-17 94.7 89 59.6
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.5e-17 93.2 55 80.0
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 5.9e-17 92.4 89 55.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.9e-17 92.4 52 84.6
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.9e-17 92.4 52 84.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.8e-13 80.9 152 38.2
arahy.Tifrunner.gnm1.ann1.B82PT4 Arachis hypogaea HOM05D003430 ORTHO05D014065 4.4e-12 76.3 94 52.1
arahy.Tifrunner.gnm1.ann1.U8L35G Arachis hypogaea HOM05D003430 ORTHO05D014065 7.5e-12 75.5 95 50.5
arahy.Tifrunner.gnm1.ann1.MDP5TU Arachis hypogaea HOM05D003430 ORTHO05D014065 1.8e-10 70.9 38 92.1
arahy.Tifrunner.gnm1.ann1.SLB19S Arachis hypogaea HOM05D003430 ORTHO05D014065 1.8e-10 70.9 38 92.1
Sc11g0004430 Simmondsia chinensis HOM05D003430 ORTHO05D014065 4.1e-10 69.7 36 94.4
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 5.4e-10 69.3 87 51.7
C01p34970 Brassica napus HOM05D003430 ORTHO05D014065 7.0e-10 68.9 90 50.0
BolC1t03463H Brassica oleracea HOM05D003430 ORTHO05D014065 7.0e-10 68.9 90 50.0
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 7.0e-10 68.9 90 50.0
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 7.0e-10 68.9 90 50.0
BraSC48t46246Z Brassica rapa HOM05D003430 ORTHO05D014065 7.0e-10 68.9 90 50.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 7.0e-10 68.9 96 50.0
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 7.0e-10 68.9 71 53.5
BraSC77t46629Z Brassica rapa HOM05D003430 ORTHO05D014065 1.2e-09 68.2 88 50.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.6e-09 67.8 70 54.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 2.0e-09 67.4 70 54.3
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.0e-09 67.4 80 47.5
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.7e-09 67.0 81 50.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.5e-09 66.6 70 52.9
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 3.5e-09 66.6 70 54.3
BraSC54t46374Z Brassica rapa HOM05D003430 ORTHO05D014065 4.5e-09 66.2 37 89.2
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.9e-09 65.9 70 52.9
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 5.9e-09 65.9 70 51.4
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 7.8e-09 65.5 80 47.5
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 7.8e-09 65.5 69 52.2
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.0e-08 65.1 70 51.4
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-08 65.1 70 52.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-08 65.1 70 52.9
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-08 65.1 70 52.9
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.0e-08 65.1 70 52.9
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.3e-08 64.7 70 50.0
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.3e-08 64.7 108 40.7
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-08 64.7 70 52.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 1.3e-08 64.7 70 52.9
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.7e-08 64.3 70 52.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.7e-08 64.3 70 52.9
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.7e-08 64.3 129 36.4
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.7e-08 64.3 70 51.4
Dinv06858 Davidia involucrata HOM05D003430 ORTHO05D014065 2.3e-08 63.9 35 88.6
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.3e-08 63.9 64 56.2
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.3e-08 63.9 70 51.4
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.3e-08 63.9 70 51.4
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.3e-08 63.9 70 50.0
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 50.0
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 54.3
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 51.4
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 52.9
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.9e-08 63.5 108 40.7
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 50.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 48.6
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 50.0
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 2.9e-08 63.5 70 52.9
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 5.0e-08 62.8 75 46.7
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 5.0e-08 62.8 85 44.7
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 5.0e-08 62.8 70 52.9
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 6.6e-08 62.4 70 52.9
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 6.6e-08 62.4 70 52.9
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 6.6e-08 62.4 70 52.9
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 6.6e-08 62.4 70 52.9
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 6.6e-08 62.4 70 48.6
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 8.6e-08 62.0 63 55.6
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 8.6e-08 62.0 75 49.3
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 8.6e-08 62.0 64 51.6
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 8.6e-08 62.0 70 52.9
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 8.6e-08 62.0 70 51.4
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.1e-07 61.6 70 50.0
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.1e-07 61.6 70 47.1
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.1e-07 61.6 70 47.1
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.1e-07 61.6 70 47.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.5e-07 61.2 70 50.0
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.5e-07 61.2 85 44.7
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.5e-07 61.2 64 51.6
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.5e-07 61.2 70 47.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.5e-07 61.2 70 48.6
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.5e-07 61.2 70 48.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.5e-07 61.2 75 49.3
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.9e-07 60.8 71 46.5
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.9e-07 60.8 71 46.5
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-07 60.8 70 48.6
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.9e-07 60.8 75 49.3
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.9e-07 60.8 75 48.0
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.9e-07 60.8 81 46.9
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.9e-07 60.8 75 49.3
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.9e-07 60.8 85 45.9
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.9e-07 60.8 75 49.3
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.9e-07 60.8 87 44.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.9e-07 60.8 70 50.0
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.5e-07 60.5 75 46.7
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 2.5e-07 60.5 69 47.8
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.5e-07 60.5 77 44.2
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 3.3e-07 60.1 75 49.3
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 3.3e-07 60.1 75 49.3
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 3.3e-07 60.1 71 43.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 4.3e-07 59.7 75 46.7
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 4.3e-07 59.7 70 45.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.3e-07 59.7 75 48.0
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 5.6e-07 59.3 70 45.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 7.3e-07 58.9 74 45.9
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 9.5e-07 58.5 70 47.1
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 9.5e-07 58.5 70 50.0
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.2e-06 58.2 70 47.1
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.2e-06 58.2 69 44.9
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.2e-06 58.2 75 45.3
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.2e-06 58.2 75 46.7
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.6e-06 57.8 75 46.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.8e-06 57.0 70 41.4
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 2.8e-06 57.0 70 41.4
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 3.6e-06 56.6 70 41.4
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.7e-06 56.2 79 49.4
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 8.0e-06 55.5 69 44.9
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 8.0e-06 55.5 70 40.0
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 8.0e-06 55.5 63 44.4


User provided reference genes

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