Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.7e-238 828.9 418 100.0
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.0e-33 148.7 112 67.0
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 1.0e-33 148.7 112 67.9
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 2.3e-33 147.5 112 68.8
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 1.1e-32 145.2 112 67.0
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 1.5e-32 144.8 112 67.0
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 2.5e-32 144.1 112 66.1
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 3.3e-32 143.7 112 67.0
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 5.6e-32 142.9 112 65.2
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.6e-32 142.9 112 64.3
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 5.6e-32 142.9 112 64.3
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 7.3e-32 142.5 110 67.3
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 7.3e-32 142.5 112 67.9
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 9.5e-32 142.1 112 66.1
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 9.5e-32 142.1 112 66.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 9.5e-32 142.1 112 66.1
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 1.2e-31 141.7 112 66.1
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 1.2e-31 141.7 112 65.2
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 1.2e-31 141.7 112 65.2
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 1.2e-31 141.7 112 65.2
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 1.2e-31 141.7 112 66.1
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 1.6e-31 141.4 112 65.2
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 2.1e-31 141.0 112 64.3
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 2.1e-31 141.0 112 64.3
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 2.1e-31 141.0 112 65.2
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 2.8e-31 140.6 112 64.3
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 3.6e-31 140.2 112 62.5
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 3.6e-31 140.2 112 64.3
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 3.6e-31 140.2 112 64.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 3.6e-31 140.2 112 65.2
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 3.6e-31 140.2 112 65.2
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 3.6e-31 140.2 112 63.4
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 4.7e-31 139.8 112 62.5
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 6.2e-31 139.4 112 62.5
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 6.2e-31 139.4 112 65.2
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 8.1e-31 139.0 112 64.3
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 1.1e-30 138.7 112 61.6
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 1.1e-30 138.7 112 63.4
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 1.1e-30 138.7 112 64.3
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 1.4e-30 138.3 112 64.3
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.4e-30 138.3 113 62.8
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 1.8e-30 137.9 114 62.3
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 1.8e-30 137.9 114 62.3
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 1.8e-30 137.9 114 62.3
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 1.8e-30 137.9 114 62.3
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 2.3e-30 137.5 112 64.3
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 2.3e-30 137.5 112 63.4
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 3.1e-30 137.1 112 63.4
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 4.0e-30 136.7 114 61.4
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 4.0e-30 136.7 114 61.4
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 4.0e-30 136.7 112 62.5
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 5.2e-30 136.3 112 62.5
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 5.2e-30 136.3 112 61.6
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 5.2e-30 136.3 112 60.7
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 6.8e-30 136.0 112 62.5
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 6.8e-30 136.0 112 62.5
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 8.9e-30 135.6 112 61.6
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 1.5e-29 134.8 112 61.6
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 1.5e-29 134.8 112 63.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 2.0e-29 134.4 112 63.4
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 2.6e-29 134.0 112 61.6
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 2.6e-29 134.0 112 61.6
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 4.4e-29 133.3 112 59.8
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 7.5e-29 132.5 112 60.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 1.7e-28 131.3 112 61.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.7e-28 131.3 128 56.2
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 1.7e-28 131.3 112 59.8
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 2.9e-28 130.6 113 60.2
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 3.7e-28 130.2 112 61.6
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 3.7e-28 130.2 112 61.6
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 3.7e-28 130.2 112 61.6
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 4.9e-28 129.8 112 59.8
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 6.4e-28 129.4 112 58.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 8.3e-28 129.0 112 57.1
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 8.3e-28 129.0 112 60.7
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 1.1e-27 128.6 112 59.8
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 1.4e-27 128.3 112 58.9
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 1.9e-27 127.9 112 58.9
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 2.4e-27 127.5 113 60.2
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 3.2e-27 127.1 112 58.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 3.2e-27 127.1 112 58.0
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 3.2e-27 127.1 112 58.0
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 4.1e-27 126.7 112 56.2
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 5.4e-27 126.3 112 58.0
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 9.2e-27 125.6 112 56.2
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 3.5e-26 123.6 112 58.9
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 3.5e-26 123.6 115 55.7
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 3.5e-26 123.6 112 58.9
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 4.6e-26 123.2 112 58.0
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 6.0e-26 122.9 112 57.1
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 6.0e-26 122.9 112 58.9
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 1.3e-25 121.7 112 56.2
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 1.3e-25 121.7 112 57.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 6.6e-25 119.4 122 55.7
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 8.6e-25 119.0 112 56.2
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 9.5e-24 115.5 112 51.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 9.5e-24 115.5 112 55.4
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 6.2e-23 112.8 112 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 9.2e-19 99.0 110 44.5
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 9.2e-19 99.0 112 45.5
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 7.8e-18 95.9 108 48.1
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 7.8e-18 95.9 110 47.3
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.3e-17 95.1 103 53.4
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 6.2e-15 86.3 112 42.0
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 3.8e-12 77.0 73 54.8
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 3.2e-11 73.9 73 52.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 6.2e-07 59.7 51 60.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.8e-06 58.2 43 62.8
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.4e-06 57.8 43 62.8
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 2.4e-06 57.8 42 61.9


User provided reference genes

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