Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.0e-90 334.7 169 100.0
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 2.5e-23 112.8 173 41.0
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 2.5e-23 112.8 128 48.4
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 3.3e-23 112.5 185 39.5
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 3.3e-23 112.5 173 41.0
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 4.3e-23 112.1 162 42.0
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 4.3e-23 112.1 173 40.5
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 4.3e-23 112.1 165 40.6
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 4.3e-23 112.1 165 40.0
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 5.6e-23 111.7 165 40.0
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 5.6e-23 111.7 165 40.0
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 5.6e-23 111.7 162 41.4
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 5.6e-23 111.7 122 50.8
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.6e-23 111.7 172 40.1
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 7.3e-23 111.3 171 39.2
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 7.3e-23 111.3 171 39.2
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 7.3e-23 111.3 171 39.2
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 9.5e-23 110.9 173 39.9
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 9.5e-23 110.9 173 39.9
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 9.5e-23 110.9 173 38.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 9.5e-23 110.9 173 38.7
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 9.5e-23 110.9 166 41.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 9.5e-23 110.9 166 41.6
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 9.5e-23 110.9 165 39.4
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 9.5e-23 110.9 166 41.6
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 9.5e-23 110.9 172 40.1
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 40.6
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 1.2e-22 110.5 165 42.4
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 1.6e-22 110.2 165 40.6
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 1.6e-22 110.2 174 40.2
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 1.6e-22 110.2 171 39.2
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 1.6e-22 110.2 174 40.8
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 1.6e-22 110.2 172 40.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 1.6e-22 110.2 171 39.2
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 2.1e-22 109.8 173 38.7
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 2.8e-22 109.4 165 41.8
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 2.8e-22 109.4 121 48.8
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 2.8e-22 109.4 121 48.8
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 2.8e-22 109.4 120 50.8
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 2.8e-22 109.4 173 40.5
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 3.6e-22 109.0 173 39.9
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 3.6e-22 109.0 165 41.8
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 3.6e-22 109.0 121 47.9
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.6e-22 109.0 173 40.5
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 3.6e-22 109.0 165 40.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 3.6e-22 109.0 121 47.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 3.6e-22 109.0 121 47.9
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 3.6e-22 109.0 121 47.9
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 3.6e-22 109.0 165 40.0
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 4.7e-22 108.6 165 41.2
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 4.7e-22 108.6 165 40.6
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 4.7e-22 108.6 173 39.9
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 4.7e-22 108.6 173 39.9
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 4.7e-22 108.6 173 39.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 4.7e-22 108.6 121 50.4
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 6.2e-22 108.2 162 40.1
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 6.2e-22 108.2 121 49.6
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 6.2e-22 108.2 165 38.8
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 6.2e-22 108.2 165 40.6
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 6.2e-22 108.2 173 39.9
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 8.0e-22 107.8 165 41.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 1.4e-21 107.1 173 39.3
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.4e-21 107.1 159 40.9
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 1.4e-21 107.1 173 38.2
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 1.4e-21 107.1 174 40.2
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 1.8e-21 106.7 160 41.9
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 1.8e-21 106.7 174 38.5
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 1.8e-21 106.7 173 38.7
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 1.8e-21 106.7 173 38.7
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 1.8e-21 106.7 173 39.9
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 3.1e-21 105.9 162 38.9
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 4.0e-21 105.5 173 39.3
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 4.0e-21 105.5 173 38.7
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 4.0e-21 105.5 121 47.1
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 5.2e-21 105.1 173 39.3
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 6.8e-21 104.8 173 39.3
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 8.9e-21 104.4 173 39.9
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 1.5e-20 103.6 164 39.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 1.5e-20 103.6 173 39.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 1.5e-20 103.6 173 38.2
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 2.6e-20 102.8 173 38.2
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 3.4e-20 102.4 161 39.8
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 4.4e-20 102.1 173 38.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 9.8e-20 100.9 171 38.6
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 1.3e-19 100.5 162 40.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 2.4e-18 96.3 175 36.6
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 4.1e-18 95.5 127 44.9
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 3.6e-14 82.4 156 35.9
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 6.2e-14 81.6 181 30.9
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.1e-13 80.9 133 37.6
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 1.4e-13 80.5 135 35.6
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 3.1e-13 79.3 158 31.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 1.5e-12 77.0 128 35.2
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 2.4e-10 69.7 54 59.3
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 4.1e-10 68.9 95 37.9
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 4.1e-10 68.9 107 34.6
SHI13058 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-08 63.2 49 69.4
Atru.chr4.1080 Acer truncatum HOM05D000002 ORTHO05D000001 1.9e-07 60.1 68 50.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 1.6e-06 57.0 42 69.0
PSO832G4595 Papaver somniferum HOM05D000002 ORTHO05D000001 3.6e-06 55.8 52 51.9
Ciclev10003497m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.7e-06 55.5 47 57.4
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 4.7e-06 55.5 48 60.4
RcHm_v2.0_Chr5g0080061 Rosa chinensis HOM05D000002 ORTHO05D000001 6.2e-06 55.1 64 46.9
TPR.G40695 Trifolium pratense HOM05D000002 ORTHO05D000001 6.2e-06 55.1 64 40.6
CSS0004228 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-06 54.7 55 56.4
CSS0020427 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-06 54.7 55 56.4


User provided reference genes

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