Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31059 Sapria himalayana HOM05D000147 ORTHO05D005311 1.2e-132 476.5 238 100.0
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 5.2e-67 258.5 218 59.6
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 2.0e-66 256.5 222 59.5
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 2.0e-66 256.5 231 58.0
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 7.5e-66 254.6 218 59.6
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 9.8e-66 254.2 221 59.7
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 6.3e-65 251.5 224 57.6
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 6.3e-65 251.5 222 61.7
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 8.3e-65 251.1 219 59.4
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 1.1e-64 250.8 217 61.3
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 2.4e-64 249.6 232 56.5
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 9.2e-64 247.7 223 58.7
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 1.2e-63 247.3 218 57.8
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 2.0e-63 246.5 219 58.4
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 2.7e-63 246.1 232 56.0
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 5.9e-63 245.0 232 55.6
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 1.7e-62 243.4 220 56.8
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 3.8e-62 242.3 224 56.7
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 5.0e-62 241.9 234 54.7
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 1.1e-61 240.7 219 58.4
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 1.1e-61 240.7 234 54.7
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 1.5e-61 240.4 217 56.7
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 1.9e-61 240.0 218 57.3
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 2.5e-61 239.6 218 59.6
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 2.5e-61 239.6 219 56.6
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 3.3e-61 239.2 218 56.4
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 4.3e-61 238.8 216 58.3
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 5.6e-61 238.4 234 53.4
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 7.3e-61 238.0 217 58.1
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 7.3e-61 238.0 218 58.3
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 1.2e-60 237.3 217 55.8
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 1.6e-60 236.9 221 55.7
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 2.8e-60 236.1 217 55.3
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 2.8e-60 236.1 220 54.5
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 3.6e-60 235.7 218 56.9
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 8.0e-60 234.6 217 55.3
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 8.0e-60 234.6 217 55.3
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 8.0e-60 234.6 215 57.7
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 8.0e-60 234.6 221 56.6
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.0e-59 234.2 217 57.1
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 1.0e-59 234.2 217 55.8
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 1.4e-59 233.8 217 55.3
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 1.8e-59 233.4 218 53.2
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 2.3e-59 233.0 217 57.1
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 2.3e-59 233.0 220 58.6
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 2.3e-59 233.0 220 56.4
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 4.0e-59 232.3 221 54.8
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 5.2e-59 231.9 218 55.5
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 6.8e-59 231.5 218 54.6
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 8.9e-59 231.1 217 55.8
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 8.9e-59 231.1 224 53.6
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 1.2e-58 230.7 221 55.7
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 1.2e-58 230.7 217 54.8
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.5e-58 230.3 221 54.3
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 1.5e-58 230.3 217 54.4
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 2.0e-58 229.9 221 53.8
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 2.6e-58 229.6 224 55.8
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 2.6e-58 229.6 220 55.0
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 3.4e-58 229.2 221 54.3
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 4.4e-58 228.8 239 49.8
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 4.4e-58 228.8 217 54.4
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 5.8e-58 228.4 222 55.9
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 5.8e-58 228.4 228 52.2
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 7.5e-58 228.0 221 53.4
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 9.8e-58 227.6 217 53.5
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 1.3e-57 227.3 220 53.2
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 2.9e-57 226.1 220 55.9
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 2.9e-57 226.1 242 50.4
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 2.9e-57 226.1 221 53.8
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 2.9e-57 226.1 217 53.5
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 2.9e-57 226.1 220 54.1
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 3.7e-57 225.7 219 54.3
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 3.7e-57 225.7 224 53.6
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 3.7e-57 225.7 221 54.3
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 3.7e-57 225.7 221 52.9
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 3.7e-57 225.7 218 55.5
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 6.4e-57 224.9 220 53.2
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 1.4e-56 223.8 217 52.5
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 2.4e-56 223.0 217 54.4
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 2.4e-56 223.0 217 53.5
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 3.2e-56 222.6 217 54.8
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 4.1e-56 222.2 219 52.5
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 5.4e-56 221.9 217 53.9
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 5.4e-56 221.9 217 53.9
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 5.4e-56 221.9 221 53.4
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 7.0e-56 221.5 214 54.2
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 9.2e-56 221.1 217 54.4
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 2.0e-55 219.9 220 52.7
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 2.7e-55 219.5 217 52.5
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 3.5e-55 219.2 217 53.5
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 7.8e-55 218.0 215 53.0
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 3.0e-54 216.1 217 53.0
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 3.9e-54 215.7 219 53.0
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 6.6e-54 214.9 217 53.9
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 6.6e-54 214.9 217 53.5
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 6.6e-54 214.9 224 50.0
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 2.5e-53 213.0 219 52.5
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 5.6e-53 211.8 218 51.8
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 5.6e-53 211.8 217 51.2
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 7.3e-53 211.5 220 51.4
SEGI_34337 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 1.8e-51 206.8 219 48.9
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 2.0e-50 203.4 220 50.0
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 3.4e-50 202.6 215 54.4
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 4.4e-50 202.2 226 53.1
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 3.7e-49 199.1 168 61.3
Nitab4.5_0008057g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 3.7e-49 199.1 168 61.3
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 6.4e-49 198.4 168 60.1
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 1.1e-48 197.6 222 46.4
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 2.1e-47 193.4 216 47.7
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 3.0e-46 189.5 216 47.7
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 6.2e-44 181.8 220 48.6
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 8.1e-44 181.4 202 53.5
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 8.1e-44 181.4 214 50.9
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 3.1e-43 179.5 243 44.9
Lj3g0004493 Lotus japonicus HOM05D000147 ORTHO05D025190 1.7e-41 173.7 210 48.1
LjContig00460g0026987 Lotus japonicus HOM05D000147 ORTHO05D025190 2.2e-41 173.3 206 49.5
Lj3g0002274 Lotus japonicus HOM05D000147 ORTHO05D025190 2.9e-41 172.9 196 51.0
Migut.D01933 Erythranthe guttata HOM05D000147 ORTHO05D005311 5.4e-40 168.7 205 43.4
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 7.1e-40 168.3 209 42.1
Sabra07G0057300 Salix brachista HOM05D000147 ORTHO05D005311 9.2e-40 167.9 205 47.3
Haze_11747 Corylus avellana HOM05D000147 ORTHO05D025190 1.7e-38 163.7 151 58.9
Rhsim09G0074800 Rhododendron simsii HOM05D000147 ORTHO05D005311 3.0e-38 162.9 142 58.5
Lj3g0009641 Lotus japonicus HOM05D000147 ORTHO05D005311 2.6e-34 149.8 204 45.1
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 7.6e-34 148.3 140 53.6
LjContig00430g0004045 Lotus japonicus HOM05D000147 ORTHO05D025190 5.6e-29 132.1 136 52.2
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 1.3e-25 120.9 219 37.0
SGA_v2.0_scaffold7G04135 Striga asiatica HOM05D000147 ORTHO05D406079 1.7e-25 120.6 225 35.1
SalBow2G1925 Salvia bowleyana HOM05D000147 ORTHO05D005311 6.4e-25 118.6 209 40.2
Pp3c5_8900 Physcomitrium patens HOM05D000147 ORTHO05D005311 1.0e-22 111.3 236 34.3
Lsat_1_v5_gn_5_32401 Lactuca sativa HOM05D000147 ORTHO05D005311 3.3e-21 106.3 158 41.8
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 3.6e-20 102.8 142 44.4
Rhsim09G0074700 Rhododendron simsii HOM05D000147 ORTHO05D048307 3.4e-18 96.3 70 67.1
Pp3c18_15920 Physcomitrium patens HOM05D000147 ORTHO05D005311 8.4e-17 91.7 253 27.7
Lsat_1_v5_gn_3_18480 Lactuca sativa HOM05D000147 ORTHO05D005311 2.4e-16 90.1 145 37.9
HanXRQChr04g0096721 Helianthus annuus HOM05D001137 ORTHO05D048307 4.2e-16 89.4 66 63.6
Lsat_1_v5_gn_8_102480 Lactuca sativa HOM05D001455 ORTHO05D005311 1.2e-10 71.2 92 43.5
SMO198G0041 Selaginella moellendorffii HOM05D000147 ORTHO05D377854 2.5e-08 63.5 185 29.2
SMO203G0080 Selaginella moellendorffii HOM05D000147 ORTHO05D005311 4.2e-08 62.8 134 30.6


User provided reference genes

Program Settings