Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30748 Sapria himalayana HOM05D006523 ORTHO05D008212 3.8e-82 308.5 209 100.0
AL6G24460 Arabidopsis lyrata HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
AT5G13830 Arabidopsis thaliana HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
BcaC04g19074 Brassica carinata HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
BcaC04g24249 Brassica carinata HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
A10p24510 Brassica napus HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
BolC9t59161H Brassica oleracea HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
BraA10t44516Z Brassica rapa HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
Ciclev10033366m.g Citrus clementina HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
Sp6g30170 Schrenkiella parvula HOM05D006523 ORTHO05D008212 1.5e-17 94.0 68 70.6
C09p63250 Brassica napus HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
FvH4_7g22770 Fragaria vesca HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
FAN01G0003 Fragaria x ananassa HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
FAN01G0853 Fragaria x ananassa HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
FAN03G0736 Fragaria x ananassa HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
FAN06G1109 Fragaria x ananassa HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
FAN06G3404 Fragaria x ananassa HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
TAR633G0385 Trochodendron aralioides HOM05D006523 ORTHO05D008212 1.9e-17 93.6 68 70.6
Aa31sc24G140 Aethionema arabicum HOM05D006523 ORTHO05D008212 2.5e-17 93.2 88 59.1
ATR0559G152 Amborella trichopoda HOM05D006523 ORTHO05D008212 2.5e-17 93.2 68 70.6
Lsat_1_v5_gn_2_118400 Lactuca sativa HOM05D006523 ORTHO05D008212 2.5e-17 93.2 68 70.6
Nn8g38773 Nelumbo nucifera HOM05D006523 ORTHO05D008212 2.5e-17 93.2 68 69.1
Carub.0006s1202 Capsella rubella HOM05D006523 ORTHO05D008212 4.3e-17 92.4 68 70.6
CARHR199600 Cardamine hirsuta HOM05D006523 ORTHO05D008212 4.3e-17 92.4 68 70.6
COL.COLO4_15080 Corchorus olitorius HOM05D006523 ORTHO05D008212 4.3e-17 92.4 68 70.6
Thhalv10014583m.g Eutrema salsugineum HOM05D006523 ORTHO05D008212 4.3e-17 92.4 68 70.6
Manes.10G029100 Manihot esculenta HOM05D006523 ORTHO05D008212 4.3e-17 92.4 68 70.6
CDE07G1400 Ceratophyllum demersum HOM05D006523 ORTHO05D008212 5.7e-17 92.0 68 70.6
Prupe.2G237400 Prunus persica HOM05D006523 ORTHO05D008212 5.7e-17 92.0 68 70.6
Ah.16g102450 Amaranthus hybridus HOM05D006523 ORTHO05D008212 7.4e-17 91.7 68 69.1
Dinv03705 Davidia involucrata HOM05D006523 ORTHO05D008212 7.4e-17 91.7 68 69.1
Atru.chr12.422 Acer truncatum HOM05D006523 ORTHO05D008212 9.6e-17 91.3 68 69.1
FAN10G0859 Fragaria x ananassa HOM05D006523 ORTHO05D008212 9.6e-17 91.3 68 69.1
CSS0042327 Camellia sinensis var. sinensis HOM05D006523 ORTHO05D008212 1.3e-16 90.9 68 67.6
MD07G1200600 Malus domestica HOM05D006523 ORTHO05D008212 1.3e-16 90.9 68 69.1
RcHm_v2.0_Chr1g0367871 Rosa chinensis HOM05D006523 ORTHO05D008212 1.3e-16 90.9 68 70.6
Thecc.10G036400 Theobroma cacao HOM05D006523 ORTHO05D008212 1.3e-16 90.9 68 67.6
Cpa.g.sc1.423 Carica papaya HOM05D006523 ORTHO05D008212 1.6e-16 90.5 68 69.1
EL10Ac2g04730 Beta vulgaris HOM05D006523 ORTHO05D008212 2.1e-16 90.1 68 66.2
AUR62012110 Chenopodium quinoa HOM05D006523 ORTHO05D008212 2.1e-16 90.1 68 66.2
QL08p059471 Quercus lobata HOM05D006523 ORTHO05D008212 2.1e-16 90.1 68 69.1
CANSAT56G0033 Cannabis sativa HOM05D006523 ORTHO05D008212 2.8e-16 89.7 68 69.1
CANSAT56G2206 Cannabis sativa HOM05D006523 ORTHO05D008212 2.8e-16 89.7 68 69.1
Potri.010G202200 Populus trichocarpa HOM05D006523 ORTHO05D008212 2.8e-16 89.7 68 69.1
GSVIVG01016519001 Vitis vinifera HOM05D006523 ORTHO05D008212 2.8e-16 89.7 68 67.6
MELO3C021618.2 Cucumis melo HOM05D006523 ORTHO05D008212 4.8e-16 89.0 68 69.1
CsaV3_5G026760 Cucumis sativus L. HOM05D006523 ORTHO05D008212 4.8e-16 89.0 68 69.1
Duzib114G1044 Durio zibethinus HOM05D006523 ORTHO05D008212 4.8e-16 89.0 68 67.6
MBI14_g12127_MAGBIO Magnolia biondii HOM05D006523 ORTHO05D008212 6.2e-16 88.6 68 66.2
Nitab4.5_0001655g0150 Nicotiana tabacum HOM05D006523 ORTHO05D008212 6.2e-16 88.6 68 67.6
Sed0022265 Sechium edule HOM05D006523 ORTHO05D008212 6.2e-16 88.6 68 69.1
THA.LOC104826739 Tarenaya hassleriana HOM05D006523 ORTHO05D008212 6.2e-16 88.6 68 67.6
HanXRQChr07g0201431 Helianthus annuus HOM05D006523 ORTHO05D008212 8.2e-16 88.2 64 70.3
Sabra10G0156100 Salix brachista HOM05D006523 ORTHO05D008212 8.2e-16 88.2 68 69.1
SEGI_07978 Sequoiadendron giganteum HOM05D006523 ORTHO05D008212 1.1e-15 87.8 68 66.2
CiPaw.01G289000 Carya illinoinensis HOM05D006523 ORTHO05D008212 1.4e-15 87.4 64 70.3
Lsat_1_v5_gn_7_16440 Lactuca sativa HOM05D006523 ORTHO05D008212 1.4e-15 87.4 66 68.2
Hund16077 Selenicereus undatus HOM05D006523 ORTHO05D008212 1.4e-15 87.4 68 64.7
Gohir.D04G064000 Gossypium hirsutum HOM05D006523 ORTHO05D008212 1.8e-15 87.0 68 67.6
Nitab4.5_0001040g0050 Nicotiana tabacum HOM05D006523 ORTHO05D008212 1.8e-15 87.0 68 66.2
HPP92_015540 Vanilla planifolia HOM05D006523 ORTHO05D008212 1.8e-15 87.0 68 67.6
Actinidia23669 Actinidia chinensis HOM05D006523 ORTHO05D008212 2.4e-15 86.7 68 66.2
Aqoxy1G00906 Aquilegia oxysepala HOM05D006523 ORTHO05D008212 2.4e-15 86.7 68 64.7
MSTRG.278 Avicennia marina HOM05D006523 ORTHO05D008212 2.4e-15 86.7 64 68.8
Ca_05884_v3 Cicer arietinum L. HOM05D006523 ORTHO05D008212 2.4e-15 86.7 68 66.2
PSO339G5561 Papaver somniferum HOM05D006523 ORTHO05D008212 2.4e-15 86.7 64 68.8
unitig_61.g26158 Utricularia gibba HOM05D006523 ORTHO05D008212 2.4e-15 86.7 64 68.8
unitig_70.g32538 Utricularia gibba HOM05D006523 ORTHO05D008212 2.4e-15 86.7 64 68.8
Eucgr.G02942 Eucalyptus grandis HOM05D006523 ORTHO05D008212 3.1e-15 86.3 68 66.2
Migut.F01454 Erythranthe guttata HOM05D006523 ORTHO05D008212 4.0e-15 85.9 64 67.2
Os03g0822300 Oryza sativa ssp. japonica HOM05D006523 ORTHO05D008212 4.0e-15 85.9 64 68.8
DCAR_011715 Daucus carota HOM05D006523 ORTHO05D008212 5.3e-15 85.5 64 68.8
Nn2g11152 Nelumbo nucifera HOM05D006523 ORTHO05D008212 5.3e-15 85.5 68 63.2
SalBow6G0031 Salvia bowleyana HOM05D006523 ORTHO05D008212 5.3e-15 85.5 64 67.2
Zm00001eb062790 Zea mays HOM05D006523 ORTHO05D008212 5.3e-15 85.5 68 64.7
Medtr5g080020 Medicago truncatula HOM05D006523 ORTHO05D008212 6.9e-15 85.1 68 66.2
ECA238G1917 Erigeron canadensis HOM05D006523 ORTHO05D008212 9.0e-15 84.7 64 68.8
PSO513G0162 Papaver somniferum HOM05D006523 ORTHO05D008212 9.0e-15 84.7 64 67.2
Glyma.14G067900 Glycine max HOM05D006523 ORTHO05D008212 1.2e-14 84.3 64 67.2
Gohir.A05G348500 Gossypium hirsutum HOM05D006523 ORTHO05D008212 1.2e-14 84.3 64 68.8
SGA_v2.0_scaffold221G42676 Striga asiatica HOM05D006523 ORTHO05D008212 1.2e-14 84.3 64 67.2
Lalb_Chr10g0104601 Lupinus albus HOM05D006523 ORTHO05D008212 1.5e-14 84.0 64 68.8
arahy.Tifrunner.gnm1.ann1.C8L4QR Arachis hypogaea HOM05D001996 ORTHO05D008212 1.0e-13 81.3 64 67.2
arahy.Tifrunner.gnm1.ann1.KN5X6X Arachis hypogaea HOM05D006523 ORTHO05D008212 1.0e-13 81.3 64 67.2
arahy.Tifrunner.gnm1.ann1.PJ9UI9 Arachis hypogaea HOM05D006523 ORTHO05D008212 1.0e-13 81.3 64 67.2
arahy.Tifrunner.gnm1.ann1.W9SC1J Arachis hypogaea HOM05D001996 ORTHO05D002072 1.0e-13 81.3 64 67.2
AUR62039361 Chenopodium quinoa HOM05D006523 ORTHO05D008212 1.3e-13 80.9 68 58.8
PGR142G0925 Punica granatum HOM05D006523 ORTHO05D008212 1.3e-13 80.9 68 61.8
arahy.Tifrunner.gnm1.ann1.107ZNT Arachis hypogaea HOM05D001996 ORTHO05D002072 1.7e-13 80.5 62 67.7
LjContig00141g0009707 Lotus japonicus HOM05D006523 ORTHO05D008212 5.0e-13 79.0 68 61.8
VMungo0647G1953 Vigna mungo HOM05D006523 ORTHO05D008212 6.5e-13 78.6 64 64.1
TWI15G0822 Tripterygium wilfordii HOM05D006523 ORTHO05D008212 8.4e-13 78.2 68 61.8
Phvul.008G232100 Phaseolus vulgaris HOM05D006523 ORTHO05D008212 1.1e-12 77.8 64 62.5
arahy.Tifrunner.gnm1.ann1.1B5LVB Arachis hypogaea HOM05D001996 ORTHO05D002072 5.5e-12 75.5 64 62.5
Mapoly0038s0066 Marchantia polymorpha HOM05D006523 ORTHO05D008212 1.6e-11 73.9 68 55.9
Pp3c22_17560 Physcomitrium patens HOM05D006523 ORTHO05D008212 1.6e-11 73.9 64 60.9
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.1e-11 73.6 84 48.8
arahy.Tifrunner.gnm1.ann1.67Z0GV Arachis hypogaea HOM05D006523 ORTHO05D008212 1.0e-10 71.2 61 62.3
CBR_g49713 Chara braunii HOM05D006523 ORTHO05D008212 2.3e-10 70.1 66 56.1
SMO145G0100 Selaginella moellendorffii HOM05D006523 ORTHO05D008212 3.0e-10 69.7 63 52.4
MCO07G108 Micromonas commoda HOM05D006523 ORTHO05D008212 4.3e-09 65.9 63 54.0
Cre06.g302650 Chlamydomonas reinhardtii HOM05D006523 ORTHO05D008212 1.4e-07 60.8 61 47.5
PRCOL_00004637 Prasinoderma coloniale HOM05D006523 ORTHO05D008212 1.2e-06 57.8 63 44.4
Gorai.012G071600 Gossypium raimondii HOM05D006523 ORTHO05D008212 1.5e-06 57.4 36 72.2


User provided reference genes

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