Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30569 Sapria himalayana HOM05D002889 ORTHO05D003366 3.6e-112 408.3 214 100.0
vmacro14774 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 1.9e-15 87.0 48 89.6
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 5.4e-15 85.5 62 74.2
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 7.1e-15 85.1 92 55.4
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 7.1e-15 85.1 69 66.7
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 7.1e-15 85.1 69 66.7
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 9.2e-15 84.7 85 56.5
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 9.2e-15 84.7 85 57.6
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 9.2e-15 84.7 60 75.0
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.2e-14 84.3 60 73.3
Sc05g0002470 Simmondsia chinensis HOM05D002889 ORTHO05D003366 1.2e-14 84.3 67 67.2
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 1.6e-14 84.0 60 75.0
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.6e-14 84.0 67 70.1
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.6e-14 84.0 67 70.1
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.6e-14 84.0 67 70.1
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 1.6e-14 84.0 67 70.1
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 2.1e-14 83.6 60 75.0
CDE02G3724 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 2.1e-14 83.6 94 54.3
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 2.1e-14 83.6 69 66.7
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 2.7e-14 83.2 62 71.0
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 2.7e-14 83.2 55 78.2
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 3.5e-14 82.8 60 73.3
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 3.5e-14 82.8 67 68.7
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 3.5e-14 82.8 60 71.7
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 3.5e-14 82.8 62 71.0
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 3.5e-14 82.8 67 68.7
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 3.5e-14 82.8 69 65.2
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 4.6e-14 82.4 62 69.4
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.6e-14 82.4 67 68.7
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.6e-14 82.4 67 68.7
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 4.6e-14 82.4 67 68.7
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 4.6e-14 82.4 67 67.2
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 4.6e-14 82.4 67 68.7
GSVIVG01028493001 Vitis vinifera HOM05D002889 ORTHO05D003366 4.6e-14 82.4 60 73.3
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 6.0e-14 82.0 60 73.3
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 6.0e-14 82.0 69 66.7
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 6.0e-14 82.0 62 71.0
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 6.0e-14 82.0 60 73.3
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 6.0e-14 82.0 60 73.3
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 6.0e-14 82.0 62 71.0
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 6.0e-14 82.0 62 69.4
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 6.0e-14 82.0 60 73.3
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 6.0e-14 82.0 62 69.4
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 7.8e-14 81.6 85 56.5
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 7.8e-14 81.6 62 67.7
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 7.8e-14 81.6 60 71.7
Os02g0617300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 7.8e-14 81.6 62 67.7
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 7.8e-14 81.6 60 71.7
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 7.8e-14 81.6 60 73.3
Actinidia37570 Actinidia chinensis HOM05D002889 ORTHO05D003366 1.0e-13 81.3 59 72.9
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 1.0e-13 81.3 60 71.7
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 1.0e-13 81.3 60 71.7
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 1.0e-13 81.3 60 71.7
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 1.0e-13 81.3 62 69.4
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 1.0e-13 81.3 62 69.4
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 1.0e-13 81.3 60 70.0
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 1.0e-13 81.3 94 55.3
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 1.0e-13 81.3 60 71.7
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-13 80.9 85 55.3
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-13 80.9 85 55.3
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 1.3e-13 80.9 60 70.0
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 1.3e-13 80.9 60 71.7
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 1.3e-13 80.9 60 71.7
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 1.3e-13 80.9 60 71.7
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 1.7e-13 80.5 60 71.7
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 1.7e-13 80.5 48 85.4
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 1.7e-13 80.5 62 69.4
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 1.7e-13 80.5 60 71.7
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 2.3e-13 80.1 67 65.7
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 2.3e-13 80.1 74 59.5
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 2.3e-13 80.1 60 70.0
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 2.3e-13 80.1 67 67.2
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 2.3e-13 80.1 62 69.4
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.3e-13 80.1 62 69.4
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.3e-13 80.1 62 69.4
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 2.3e-13 80.1 62 66.1
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 2.3e-13 80.1 60 70.0
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 2.3e-13 80.1 60 70.0
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 2.3e-13 80.1 62 67.7
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 2.3e-13 80.1 60 71.7
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 2.3e-13 80.1 49 81.6
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 2.3e-13 80.1 62 69.4
HPP92_027293 Vanilla planifolia HOM05D002889 ORTHO05D003366 2.3e-13 80.1 60 70.0
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 3.0e-13 79.7 60 71.7
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 3.0e-13 79.7 60 71.7
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 3.9e-13 79.3 48 85.4
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 3.9e-13 79.3 60 70.0
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 3.9e-13 79.3 67 67.2
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 3.9e-13 79.3 62 64.5
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 3.9e-13 79.3 60 70.0
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 5.1e-13 79.0 62 66.1
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.1e-13 79.0 67 65.7
Nitab4.5_0024802g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.1e-13 79.0 67 65.7
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 5.1e-13 79.0 51 78.4
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 5.1e-13 79.0 60 68.3
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 5.1e-13 79.0 60 68.3
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 6.6e-13 78.6 60 71.7
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 6.6e-13 78.6 60 66.7
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 67.7
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 6.6e-13 78.6 60 71.7
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 6.6e-13 78.6 60 70.0
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 6.6e-13 78.6 60 70.0
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 6.6e-13 78.6 62 66.1
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 8.6e-13 78.2 60 68.3
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 8.6e-13 78.2 62 66.1
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 8.6e-13 78.2 59 71.2
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 8.6e-13 78.2 62 67.7
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 8.6e-13 78.2 60 70.0
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 68.3
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 68.3
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 68.3
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 68.3
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 68.3
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 68.3
CDE09G0867 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 1.1e-12 77.8 67 64.2
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 1.1e-12 77.8 62 69.4
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 1.1e-12 77.8 60 70.0
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 1.1e-12 77.8 67 64.2
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 68.3
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 68.3
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 68.3
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 68.3
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 68.3
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 68.3
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 1.5e-12 77.4 67 65.7
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 1.5e-12 77.4 62 62.9
Gohir.A09G053900 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.5e-12 77.4 88 50.0
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.5e-12 77.4 46 87.0
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.5e-12 77.4 46 87.0
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 1.5e-12 77.4 60 66.7
Gohir.D09G053074 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.9e-12 77.0 60 65.0
Thecc.04G215400 Theobroma cacao HOM05D002889 ORTHO05D003366 1.9e-12 77.0 67 62.7
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 1.9e-12 77.0 49 77.6
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 2.5e-12 76.6 60 63.3
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 2.5e-12 76.6 62 62.9
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 2.5e-12 76.6 60 66.7
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 3.3e-12 76.3 67 61.2
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 3.3e-12 76.3 62 66.1
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 3.3e-12 76.3 47 80.9
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 3.3e-12 76.3 49 77.6
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 3.3e-12 76.3 62 64.5
Os04g0507500 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 4.3e-12 75.9 60 65.0
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 5.6e-12 75.5 67 64.2
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 5.6e-12 75.5 60 66.7
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 7.3e-12 75.1 46 84.8
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 7.3e-12 75.1 94 47.9
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 7.3e-12 75.1 48 77.1
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 9.6e-12 74.7 67 59.7
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 9.6e-12 74.7 46 84.8
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.2e-11 74.3 46 84.8
CBR_g12856 Chara braunii HOM05D002889 ORTHO05D003366 3.6e-11 72.8 76 53.9
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 8.1e-11 71.6 67 58.2
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 1.1e-10 71.2 46 78.3
SMO271G0072 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 1.1e-10 71.2 46 76.1
Zm00001eb258850 Zea mays HOM05D002889 ORTHO05D003366 1.1e-10 71.2 51 72.5
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 1.2e-09 67.8 46 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3270 Anthoceros agrestis HOM05D002889 ORTHO05D003366 2.0e-09 67.0 45 73.3
Pp3c3_31820 Physcomitrium patens HOM05D002889 ORTHO05D003366 2.0e-09 67.0 48 66.7
Os02g0816300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 3.4e-09 66.2 51 66.7
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 9.9e-09 64.7 46 69.6


User provided reference genes

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