Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30463 Sapria himalayana HOM05D003064 ORTHO05D001733 2.8e-85 318.5 157 100.0
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 1.7e-21 106.7 116 47.4
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.1e-20 104.0 117 47.9
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.1e-20 104.0 117 47.9
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.1e-20 104.0 117 47.9
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.1e-20 104.0 105 49.5
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 2.4e-20 102.8 112 45.5
Manes.03G089000 Manihot esculenta HOM05D003064 ORTHO05D001733 3.1e-20 102.4 107 49.5
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 7.0e-20 101.3 116 47.4
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 2.0e-19 99.8 108 46.3
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 3.5e-19 99.0 107 50.5
Oeu060706.1 Olea europaea HOM05D003064 ORTHO05D001733 3.5e-19 99.0 108 46.3
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 4.5e-19 98.6 108 46.3
Cc02_g26840 Coffea canephora HOM05D003064 ORTHO05D001733 1.0e-18 97.4 108 45.4
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 1.0e-18 97.4 108 46.3
Sopen01g033250 Solanum pennellii HOM05D003064 ORTHO05D001733 1.7e-18 96.7 115 46.1
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 2.3e-18 96.3 108 44.4
CSS0002758 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 3.8e-18 95.5 121 43.0
Migut.B01404 Erythranthe guttata HOM05D003064 ORTHO05D001733 3.8e-18 95.5 111 44.1
Ciclev10017191m.g Citrus clementina HOM05D003064 ORTHO05D001733 5.0e-18 95.1 113 45.1
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 5.0e-18 95.1 108 43.5
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 5.0e-18 95.1 108 47.2
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 1.1e-17 94.0 108 45.4
Duzib168G1332 Durio zibethinus HOM05D003064 ORTHO05D001733 1.1e-17 94.0 107 44.9
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.1e-17 94.0 105 44.8
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 1.5e-17 93.6 112 45.5
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.5e-17 93.6 105 44.8
Rhsim01G0185600 Rhododendron simsii HOM05D003064 ORTHO05D001733 1.5e-17 93.6 112 44.6
Oeu032780.1 Olea europaea HOM05D003064 ORTHO05D001733 1.9e-17 93.2 104 44.2
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 3.3e-17 92.4 105 44.8
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 3.3e-17 92.4 111 47.7
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 3.3e-17 92.4 111 47.7
PGSC0003DMG400028989 Solanum tuberosum HOM05D003064 ORTHO05D001733 3.3e-17 92.4 115 43.5
CAN.G1361.1 Capsicum annuum HOM05D003064 ORTHO05D001733 4.2e-17 92.0 107 43.9
Lalb_Chr25g0283731 Lupinus albus HOM05D003064 ORTHO05D001733 4.2e-17 92.0 110 44.5
CSS0014301 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 7.2e-17 91.3 108 39.8
CANSAT11G2107 Cannabis sativa HOM05D003064 ORTHO05D001733 7.2e-17 91.3 112 46.4
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 9.5e-17 90.9 105 43.8
Os09g0445600 Oryza sativa ssp. japonica HOM05D003064 ORTHO05D001733 9.5e-17 90.9 124 43.5
PGR119G0056 Punica granatum HOM05D003064 ORTHO05D001733 9.5e-17 90.9 108 46.3
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.6e-16 90.1 116 43.1
Manes.10G152800 Manihot esculenta HOM05D003064 ORTHO05D001733 1.6e-16 90.1 109 41.3
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.6e-16 90.1 114 44.7
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 1.6e-16 90.1 111 43.2
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 2.1e-16 89.7 108 44.4
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.1e-16 89.7 111 42.3
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 2.1e-16 89.7 108 45.4
Prupe.2G001900 Prunus persica HOM05D003064 ORTHO05D001733 2.1e-16 89.7 108 42.6
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.8e-16 89.4 111 42.3
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 2.8e-16 89.4 107 45.8
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 2.8e-16 89.4 108 44.4
Aqoxy1G00039 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 3.6e-16 89.0 109 41.3
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 3.6e-16 89.0 119 42.0
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 6.1e-16 88.2 108 43.5
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 6.1e-16 88.2 105 41.9
Potri.001G009200 Populus trichocarpa HOM05D003064 ORTHO05D001733 6.1e-16 88.2 109 43.1
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 6.1e-16 88.2 107 44.9
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 8.0e-16 87.8 110 44.5
Cfa010704 Carpinus fangiana HOM05D003064 ORTHO05D001733 1.0e-15 87.4 113 38.1
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.0e-15 87.4 105 42.9
GSVIVG01001351001 Vitis vinifera HOM05D003064 ORTHO05D001733 1.0e-15 87.4 155 35.5
CANSAT11G1331 Cannabis sativa HOM05D003064 ORTHO05D001733 1.4e-15 87.0 118 42.4
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 1.8e-15 86.7 109 44.0
Nn7g35954 Nelumbo nucifera HOM05D003064 ORTHO05D001733 1.8e-15 86.7 104 43.3
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 2.3e-15 86.3 113 43.4
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 2.3e-15 86.3 113 43.4
Haze_03274 Corylus avellana HOM05D003064 ORTHO05D001733 2.3e-15 86.3 108 38.9
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 3.0e-15 85.9 118 42.4
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 3.0e-15 85.9 108 43.5
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 3.0e-15 85.9 108 38.9
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 4.0e-15 85.5 105 37.1
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 4.0e-15 85.5 113 43.4
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 5.2e-15 85.1 113 42.5
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 5.2e-15 85.1 113 42.5
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 5.2e-15 85.1 113 42.5
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 5.2e-15 85.1 105 42.9
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 6.8e-15 84.7 106 44.3
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 8.9e-15 84.3 119 42.0
Lalb_Chr10g0105471 Lupinus albus HOM05D003064 ORTHO05D001733 8.9e-15 84.3 105 42.9
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 8.9e-15 84.3 120 40.0
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 1.2e-14 84.0 108 42.6
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 1.5e-14 83.6 113 42.5
Sed0005920 Sechium edule HOM05D003064 ORTHO05D001733 1.5e-14 83.6 108 41.7
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 2.0e-14 83.2 122 38.5
Atru.chr3.2230 Acer truncatum HOM05D003064 ORTHO05D001733 2.0e-14 83.2 93 43.0
Oeu049545.1 Olea europaea HOM05D003064 ORTHO05D001733 2.6e-14 82.8 112 41.1
Zm00001eb314350 Zea mays HOM05D003064 ORTHO05D001733 2.6e-14 82.8 115 43.5
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 3.4e-14 82.4 106 43.4
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 3.4e-14 82.4 113 40.7
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 3.4e-14 82.4 108 41.7
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 4.4e-14 82.0 109 45.0
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 5.7e-14 81.6 113 39.8
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 5.7e-14 81.6 107 41.1
VMungo1080G1851 Vigna mungo HOM05D003064 ORTHO05D001733 5.7e-14 81.6 109 41.3
Aqoxy2G00087 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 7.5e-14 81.3 106 40.6
MSTRG.18858 Avicennia marina HOM05D003064 ORTHO05D001733 7.5e-14 81.3 111 41.4
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 7.5e-14 81.3 113 39.8
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 7.5e-14 81.3 113 39.8
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 7.5e-14 81.3 113 39.8
HanXRQChr16g0520931 Helianthus annuus HOM05D003064 ORTHO05D001733 7.5e-14 81.3 108 44.4
PGR102G0542 Punica granatum HOM05D003064 ORTHO05D001733 7.5e-14 81.3 118 39.8
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 9.8e-14 80.9 113 39.8
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 9.8e-14 80.9 97 43.3
Solyc10g044880.1 Solanum lycopersicum HOM05D003064 ORTHO05D001733 9.8e-14 80.9 115 42.6
Sopen10g013830 Solanum pennellii HOM05D003064 ORTHO05D001733 9.8e-14 80.9 115 42.6
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea HOM05D003064 ORTHO05D001733 1.3e-13 80.5 100 44.0
Sabra09G0016100 Salix brachista HOM05D003064 ORTHO05D001733 1.3e-13 80.5 112 40.2
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 1.3e-13 80.5 120 37.5
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.3e-13 80.5 110 43.6
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 1.7e-13 80.1 100 44.0
Potri.009G024500 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.7e-13 80.1 112 39.3
PGSC0003DMG400015948 Solanum tuberosum HOM05D003064 ORTHO05D001733 1.7e-13 80.1 114 43.0
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 2.2e-13 79.7 113 40.7
CSS0047744 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 2.2e-13 79.7 115 39.1
Hma1.2p1_0128F.1_g059830 Hydrangea macrophylla HOM05D003064 ORTHO05D001733 2.8e-13 79.3 94 42.6
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 3.7e-13 79.0 113 40.7
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 3.7e-13 79.0 107 38.3
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 4.9e-13 78.6 106 41.5
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 8.3e-13 77.8 113 40.7
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 8.3e-13 77.8 113 40.7
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 8.3e-13 77.8 113 40.7
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 8.3e-13 77.8 111 38.7
Thhalv10015028m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 1.1e-12 77.4 113 42.5
THA.LOC104826176 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.1e-12 77.4 108 41.7
Potri.001G231300 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.4e-12 77.0 112 36.6
Sed0014538 Sechium edule HOM05D003064 ORTHO05D001733 1.4e-12 77.0 104 41.3
QL04p001663 Quercus lobata HOM05D003064 ORTHO05D001733 2.4e-12 76.3 93 39.8
unitig_749.g13489 Utricularia gibba HOM05D002499 ORTHO05D002812 3.1e-12 75.9 112 40.2
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 5.4e-12 75.1 113 40.7
BcaC02g11300 Brassica carinata HOM05D003064 ORTHO05D001733 7.0e-12 74.7 106 40.6
C04p17820 Brassica napus HOM05D003064 ORTHO05D001733 7.0e-12 74.7 106 40.6
BolC4t23330H Brassica oleracea HOM05D003064 ORTHO05D001733 7.0e-12 74.7 106 40.6
Cc01_g01060 Coffea canephora HOM05D003064 ORTHO05D001733 7.0e-12 74.7 112 38.4
Lalb_Chr01g0014941 Lupinus albus HOM05D003064 ORTHO05D001733 7.0e-12 74.7 111 36.9
Rhsim07G0049500 Rhododendron simsii HOM05D003064 ORTHO05D001733 7.0e-12 74.7 101 40.6
BcaB02g10426 Brassica carinata HOM05D003064 ORTHO05D001733 9.2e-12 74.3 106 40.6
A05p13650 Brassica napus HOM05D003064 ORTHO05D001733 9.2e-12 74.3 106 40.6
BraA05t20303Z Brassica rapa HOM05D003064 ORTHO05D001733 9.2e-12 74.3 106 40.6
PSO782G3341 Papaver somniferum HOM05D003064 ORTHO05D001733 9.2e-12 74.3 120 38.3
Carub.0004s1324 Capsella rubella HOM05D003064 ORTHO05D001733 1.2e-11 73.9 109 41.3
Migut.N00578 Erythranthe guttata HOM05D003064 ORTHO05D001733 1.6e-11 73.6 112 38.4
HPP92_004380 Vanilla planifolia HOM05D003064 ORTHO05D001733 3.5e-11 72.4 113 39.8
Cpa.g.sc1500.2 Carica papaya HOM05D003064 ORTHO05D001733 4.5e-11 72.0 111 37.8
HanXRQChr17g0564171 Helianthus annuus HOM05D003064 ORTHO05D001733 4.5e-11 72.0 117 37.6
Sed0002402 Sechium edule HOM05D003064 ORTHO05D001733 5.9e-11 71.6 111 37.8
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 7.8e-11 71.2 111 36.0
AL4G27240 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 1.0e-10 70.9 107 40.2
AL80U10020 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 1.0e-10 70.9 107 40.2
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 1.7e-10 70.1 105 39.0
AT2G31940 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 1.7e-10 70.1 107 40.2
PSO478G3040 Papaver somniferum HOM05D003064 ORTHO05D001733 2.9e-10 69.3 120 37.5
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 2.9e-10 69.3 113 38.1
MBI13_g29639_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 8.6e-10 67.8 86 41.9
Thhalv10017436m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 1.5e-09 67.0 106 39.6
FAN11G1424 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.9e-09 66.6 83 43.4
CARHR125650 Cardamine hirsuta HOM05D003064 ORTHO05D001733 2.5e-09 66.2 106 36.8
HPP92_016185 Vanilla planifolia HOM05D003064 ORTHO05D001733 8.0e-08 61.2 107 38.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.8e-07 60.1 88 38.6
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 2.3e-07 59.7 106 35.8
HPP92_026732 Vanilla planifolia HOM05D003064 ORTHO05D001733 4.0e-07 58.9 107 37.4
Migut.B00165 Erythranthe guttata HOM05D007714 ORTHO05D009659 1.5e-06 57.0 111 34.2
Sp4g14300 Schrenkiella parvula HOM05D003064 ORTHO05D001733 2.6e-06 56.2 107 36.4


User provided reference genes

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