Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.6e-140 502.7 247 100.0
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.7e-111 405.6 228 83.8
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 3.6e-111 405.2 226 84.5
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 7.9e-111 404.1 228 82.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 2.3e-110 402.5 228 82.9
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 2.3e-110 402.5 226 83.6
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.0e-110 402.1 226 84.1
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.7e-110 401.0 226 83.6
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 8.8e-110 400.6 226 83.6
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.1e-109 400.2 228 82.0
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 2.0e-109 399.4 226 83.6
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.0e-109 399.4 228 82.0
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.0e-109 399.4 226 83.2
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 3.3e-109 398.7 226 83.2
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 4.4e-109 398.3 226 83.2
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.7e-109 397.9 226 82.7
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 9.7e-109 397.1 226 82.3
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 9.7e-109 397.1 226 82.7
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.3e-108 396.7 226 82.7
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 2.2e-108 396.0 226 82.7
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 2.2e-108 396.0 226 82.7
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.8e-108 395.6 226 81.9
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.8e-108 395.6 226 82.3
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 2.8e-108 395.6 226 81.9
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 3.7e-108 395.2 227 81.1
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 3.7e-108 395.2 242 78.1
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 4.8e-108 394.8 228 82.5
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.8e-108 394.8 226 82.3
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.3e-108 394.4 226 82.7
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 6.3e-108 394.4 226 82.3
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 6.3e-108 394.4 235 80.9
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 6.3e-108 394.4 226 82.3
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 6.3e-108 394.4 226 83.2
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 8.2e-108 394.0 229 82.1
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 8.2e-108 394.0 226 82.3
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 8.2e-108 394.0 226 81.9
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.4e-107 393.3 226 82.3
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.4e-107 393.3 228 80.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 1.4e-107 393.3 226 82.7
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 1.4e-107 393.3 226 83.2
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.4e-107 393.3 236 78.4
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-107 393.3 226 82.3
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.4e-107 393.3 226 81.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 1.8e-107 392.9 227 81.1
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 1.8e-107 392.9 226 81.4
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.8e-107 392.9 226 82.7
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 2.4e-107 392.5 225 82.7
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 2.4e-107 392.5 226 81.4
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 3.1e-107 392.1 226 81.9
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 3.1e-107 392.1 228 81.1
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 3.1e-107 392.1 225 82.2
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 4.1e-107 391.7 224 81.7
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-107 391.7 226 81.4
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-107 391.7 226 81.9
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 4.1e-107 391.7 226 81.4
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 5.3e-107 391.3 226 81.9
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 7.0e-107 391.0 225 80.4
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 7.0e-107 391.0 228 78.9
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 9.1e-107 390.6 226 81.9
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.2e-106 390.2 230 80.0
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.2e-106 390.2 226 81.4
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.2e-106 390.2 226 81.4
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-106 390.2 226 81.4
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.5e-106 389.8 226 81.0
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.0e-106 389.4 226 81.0
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.0e-106 389.4 226 81.0
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 2.0e-106 389.4 227 80.6
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 2.6e-106 389.0 226 81.0
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 4.5e-106 388.3 226 80.5
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 7.7e-106 387.5 231 79.7
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 7.7e-106 387.5 226 80.1
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 1.0e-105 387.1 226 81.0
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 1.3e-105 386.7 231 79.2
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.7e-105 386.3 226 81.0
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 1.7e-105 386.3 238 77.7
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.7e-105 386.3 226 80.5
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.7e-105 386.3 226 78.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.7e-105 386.3 226 81.4
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 2.2e-105 386.0 226 81.0
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 2.9e-105 385.6 226 80.5
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 2.9e-105 385.6 226 78.3
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 3.8e-105 385.2 234 80.3
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 3.8e-105 385.2 226 77.9
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 6.5e-105 384.4 226 80.5
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 8.5e-105 384.0 226 80.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 8.5e-105 384.0 226 79.2
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 8.5e-105 384.0 224 79.5
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.5e-104 383.3 226 79.6
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.5e-104 383.3 266 72.2
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.5e-104 383.3 229 78.6
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.9e-104 382.9 226 79.6
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 1.9e-104 382.9 224 79.9
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.5e-104 382.5 226 78.8
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.5e-104 382.5 227 79.7
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 2.5e-104 382.5 226 79.6
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.5e-104 382.5 224 80.4
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.5e-104 382.5 226 77.9
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 3.2e-104 382.1 226 80.1
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 7.2e-104 380.9 226 79.6
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.2e-103 380.2 225 79.6
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.1e-103 379.4 231 77.5
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.1e-103 379.4 231 77.5
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 3.6e-103 378.6 226 77.9
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 3.6e-103 378.6 225 78.7
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 4.7e-103 378.3 226 78.8
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 4.7e-103 378.3 226 78.8
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 6.1e-103 377.9 226 77.4
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 8.0e-103 377.5 226 77.4
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.4e-102 376.7 227 80.6
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-102 375.9 226 78.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.0e-102 375.6 226 77.0
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.9e-102 375.2 226 78.8
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 8.8e-102 374.0 259 71.4
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.5e-101 373.2 226 78.8
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 2.0e-101 372.9 226 76.5
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 4.4e-101 371.7 226 77.0
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 4.4e-101 371.7 224 76.8
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.4e-101 371.7 266 69.5
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 7.4e-101 370.9 226 77.4
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 2.8e-100 369.0 226 77.9
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 3.7e-100 368.6 224 77.2
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 4.1e-99 365.2 231 76.6
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 1.2e-98 363.6 226 77.0
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.6e-98 363.2 227 75.8
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.6e-98 362.5 225 77.8
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 4.5e-98 361.7 208 81.2
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 7.7e-98 360.9 208 82.2
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.3e-97 360.1 241 73.0
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.1e-96 357.1 205 79.5
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.5e-96 356.7 208 81.2
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 7.2e-96 354.4 230 76.5
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 7.2e-96 354.4 228 73.2
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.6e-95 353.2 202 81.7
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.4e-94 350.1 252 67.9
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.8e-94 349.7 229 72.5
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 3.0e-94 349.0 229 72.5
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 4.0e-94 348.6 206 77.7
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 8.8e-94 347.4 207 78.3
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 8.3e-92 340.9 226 73.5
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.4e-91 340.1 237 68.4
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 3.5e-90 335.5 209 77.5
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 6.5e-89 331.3 209 73.7
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 8.5e-89 330.9 223 73.1
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.8e-86 323.2 224 66.5
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.8e-86 323.2 295 59.0
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 2.0e-85 319.7 222 69.8
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 2.2e-84 316.2 224 67.0
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.8e-83 313.2 223 65.5
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 4.5e-82 308.5 169 82.8
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.3e-81 306.2 168 81.5
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 4.7e-79 298.5 179 81.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.4e-75 287.0 208 69.7
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 6.6e-73 278.1 152 83.6
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 8.9e-70 267.7 234 54.3
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.2e-69 267.3 226 63.3
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 3.9e-65 252.3 146 77.4
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.6e-65 251.5 136 83.1
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 8.6e-65 251.1 134 83.6
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.4e-62 243.8 144 77.8
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.5e-61 240.4 147 78.9
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 2.9e-60 236.1 134 78.4
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 3.2e-59 232.6 210 59.5
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 4.7e-55 218.8 136 74.3
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 7.1e-51 204.9 138 71.0
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.3e-49 200.7 104 84.6
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 2.2e-44 183.3 112 79.5
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 1.3e-41 174.1 96 85.4
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 3.8e-36 156.0 87 82.8
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 9.6e-32 141.4 74 79.7
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.1e-30 137.9 85 78.8
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 3.1e-30 136.3 82 81.7
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 6.4e-28 128.6 69 78.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.2e-26 124.4 71 74.6
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 9.6e-24 114.8 81 69.1
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 1.3e-20 104.4 82 67.1
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 6.5e-20 102.1 85 62.4
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 4.3e-16 89.4 58 77.6
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 9.6e-16 88.2 44 79.5
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 2.6e-13 80.1 49 79.6
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.5e-11 72.4 80 51.2
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 2.7e-10 70.1 37 86.5
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 3.5e-10 69.7 74 52.7
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 1.0e-09 68.2 112 40.2
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 8.7e-09 65.1 38 78.9
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.1e-08 64.7 37 70.3
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 7.4e-08 62.0 30 80.0


User provided reference genes

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