Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 2.2e-61 238.8 122 100.0
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 1.6e-27 126.3 73 80.8
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 6.6e-26 120.9 70 75.7
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 4.3e-25 118.2 71 78.9
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 5.6e-25 117.9 72 77.8
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 7.3e-25 117.5 71 78.9
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 9.6e-25 117.1 70 77.1
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 9.6e-25 117.1 85 70.6
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 1.3e-24 116.7 85 65.9
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.1e-24 115.9 72 73.6
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 2.1e-24 115.9 69 79.7
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 3.6e-24 115.2 72 75.0
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 3.6e-24 115.2 71 74.6
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 3.6e-24 115.2 84 69.0
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 6.2e-24 114.4 84 67.9
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 6.2e-24 114.4 85 68.2
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 8.1e-24 114.0 69 78.3
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.1e-23 113.6 69 76.8
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.1e-23 113.6 69 76.8
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 1.1e-23 113.6 75 70.7
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 1.4e-23 113.2 79 68.4
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 1.8e-23 112.8 69 76.8
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 1.8e-23 112.8 70 74.3
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 1.8e-23 112.8 70 71.4
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.8e-23 112.8 72 72.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 2.4e-23 112.5 69 79.7
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 2.4e-23 112.5 69 71.0
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 3.1e-23 112.1 69 75.4
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 4.0e-23 111.7 69 78.3
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 5.3e-23 111.3 76 71.1
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 6.9e-23 110.9 69 76.8
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 6.9e-23 110.9 70 77.1
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 6.9e-23 110.9 70 74.3
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 9.0e-23 110.5 69 75.4
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.2e-22 110.2 72 72.2
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.2e-22 110.2 75 69.3
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 1.5e-22 109.8 69 76.8
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 1.5e-22 109.8 72 69.4
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 2.0e-22 109.4 71 70.4
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 2.6e-22 109.0 69 73.9
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 4.4e-22 108.2 72 69.4
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 5.8e-22 107.8 69 71.0
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 5.8e-22 107.8 75 70.7
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 5.8e-22 107.8 75 70.7
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 5.8e-22 107.8 75 68.0
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 7.6e-22 107.5 69 73.9
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 7.6e-22 107.5 67 74.6
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 9.9e-22 107.1 72 70.8
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 9.9e-22 107.1 84 61.9
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.3e-21 106.7 68 75.0
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.3e-21 106.7 68 75.0
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 1.7e-21 106.3 75 66.7
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.7e-21 106.3 88 59.1
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 1.7e-21 106.3 69 68.1
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 1.7e-21 106.3 72 70.8
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 2.2e-21 105.9 72 69.4
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 2.2e-21 105.9 71 71.8
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 2.2e-21 105.9 84 61.9
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 2.2e-21 105.9 72 70.8
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 2.9e-21 105.5 75 64.0
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 2.9e-21 105.5 75 64.0
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 2.9e-21 105.5 72 66.7
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 3.8e-21 105.1 69 65.2
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.9e-21 104.8 72 70.8
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 4.9e-21 104.8 68 73.5
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 4.9e-21 104.8 70 68.6
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 6.4e-21 104.4 72 68.1
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 6.4e-21 104.4 72 69.4
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 8.4e-21 104.0 68 72.1
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 1.1e-20 103.6 75 66.7
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 1.1e-20 103.6 72 70.8
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.1e-20 103.6 67 71.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 1.4e-20 103.2 75 65.3
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.4e-20 103.2 72 66.7
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.4e-20 103.2 72 68.1
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 1.4e-20 103.2 72 68.1
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 1.9e-20 102.8 69 73.9
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 1.9e-20 102.8 69 65.2
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 2.4e-20 102.4 82 57.3
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 2.4e-20 102.4 75 64.0
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.2e-20 102.1 69 72.5
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 4.2e-20 101.7 71 69.0
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 4.2e-20 101.7 84 60.7
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 5.4e-20 101.3 72 63.9
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 7.1e-20 100.9 67 73.1
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 9.3e-20 100.5 85 60.0
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 9.3e-20 100.5 72 66.7
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 6.0e-19 97.8 70 67.1
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 1.0e-18 97.1 72 65.3
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 1.0e-18 97.1 70 67.1
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.3e-18 96.7 70 67.1
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.7e-18 96.3 84 58.3
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 3.0e-18 95.5 85 56.5
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 3.9e-18 95.1 90 58.9
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 6.6e-18 94.4 69 68.1
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 8.7e-18 94.0 68 67.6
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 1.1e-17 93.6 74 62.2
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 1.1e-17 93.6 69 63.8
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 3.3e-17 92.0 69 63.8
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 3.3e-17 92.0 66 68.2
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 4.8e-16 88.2 69 59.4
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 6.9e-15 84.3 62 66.1
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.5e-14 83.2 69 56.5
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.7e-13 79.7 68 61.8
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 3.2e-12 75.5 71 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.0e-10 70.5 59 62.7
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.1e-09 67.0 54 61.1
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 2.5e-09 65.9 45 80.0
SHI13850 Sapria himalayana HOM05D000034 ORTHO05D000037 4.3e-09 65.1 40 85.0
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 6.9e-07 57.8 70 44.3


User provided reference genes

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