Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1506.9 756 100.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1170.2 740 78.6
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1166.8 749 78.4
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1162.9 739 78.8
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 749 78.0
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1156.0 743 78.5
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1155.6 742 77.6
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1152.9 749 77.3
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 748 77.8
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1152.1 743 78.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1151.7 750 77.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1151.0 750 76.9
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1148.7 747 76.8
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1148.3 744 78.0
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1145.2 745 77.4
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1143.6 744 77.2
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1143.3 744 77.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1142.1 744 77.2
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1142.1 745 76.9
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1139.8 741 77.5
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1139.4 741 77.3
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 750 76.3
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 741 76.7
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1137.1 745 76.8
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 741 77.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1136.3 743 77.0
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1135.2 744 76.7
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1134.8 743 76.7
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1134.4 749 76.0
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1134.0 743 76.9
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1134.0 745 76.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 741 75.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1133.2 746 76.4
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1133.2 744 77.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1130.9 746 76.4
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1130.5 744 75.4
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1130.2 746 76.1
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1129.8 704 79.4
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1129.0 746 75.9
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1128.2 741 75.3
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1127.9 755 75.9
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1127.1 757 75.8
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1127.1 746 75.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1126.7 748 75.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1126.7 777 73.4
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1126.3 748 76.1
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1125.9 757 75.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1125.5 744 75.4
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1125.5 741 75.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1125.2 748 75.4
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1124.8 750 75.3
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 752 75.4
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1123.6 714 78.3
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1122.1 748 76.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1120.5 749 75.2
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1120.5 748 74.9
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1120.1 742 76.4
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1119.8 746 75.6
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1119.4 740 74.9
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1119.0 746 75.3
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1118.6 747 75.5
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1117.4 746 75.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1116.7 746 75.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1115.5 744 75.7
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1115.5 744 76.1
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1115.5 748 75.4
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1114.8 690 79.6
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1112.8 751 73.9
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1112.8 741 76.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1110.5 746 75.9
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1110.1 753 74.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1109.4 752 73.8
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 742 74.1
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 744 75.5
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1105.5 747 74.2
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1105.5 749 74.4
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1102.0 747 73.9
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1101.3 748 74.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 747 73.6
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 748 73.3
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1099.7 746 74.3
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1099.3 747 73.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1099.0 800 71.1
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1098.6 751 72.8
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1095.5 747 73.4
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1095.5 747 73.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1093.6 746 72.9
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1093.6 841 68.1
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1092.8 745 73.7
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1092.0 752 72.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1092.0 749 73.4
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1089.7 746 72.5
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1088.6 759 73.1
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1085.9 746 72.8
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1084.7 746 72.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1083.6 746 74.0
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1083.6 658 80.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1083.6 759 72.7
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1082.8 738 73.7
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1079.7 779 69.8
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1078.5 737 73.8
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1077.4 658 80.2
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1075.5 752 71.7
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1075.1 703 75.7
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 3.6e-311 1071.2 714 75.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 8.7e-310 1066.6 742 72.4
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 7.4e-309 1063.5 659 79.4
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 2.2e-305 1052.0 750 71.9
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 4.9e-305 1050.8 703 74.3
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 4.6e-303 1044.3 716 73.2
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 3.9e-302 1041.2 747 70.3
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 5.7e-301 1037.3 661 77.9
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 1.4e-294 1016.1 658 77.7
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 5.5e-288 994.2 1044 53.8
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 1.2e-287 993.0 743 70.4
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 2.7e-287 991.9 703 70.6
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 7.7e-274 947.2 688 66.7
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.2e-273 945.7 625 75.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 2.5e-272 942.2 680 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 7.2e-272 940.6 684 66.7
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.2e-271 939.9 749 66.9
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.8e-268 928.7 686 66.6
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.8e-268 928.7 686 66.6
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.8e-267 926.0 686 66.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.5e-266 921.4 706 65.0
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.6e-239 832.0 684 59.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-238 829.7 600 71.3
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 9.2e-235 817.4 600 70.8
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.3e-224 782.3 679 57.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 6.0e-218 761.5 682 56.5
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 9.0e-206 721.1 673 55.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.5e-189 665.6 685 51.2
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.1e-178 628.6 674 54.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 5.0e-172 609.0 718 46.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.5e-149 533.1 301 84.4
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 8.8e-145 518.5 319 82.1
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.2e-143 513.8 365 70.4
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.3e-129 467.2 297 80.5
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 3.5e-125 453.4 297 77.1
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.3e-111 408.3 302 67.9
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.5e-107 394.8 294 65.0
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.1e-94 352.1 238 73.1
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 3.0e-84 317.4 243 66.7
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 6.2e-82 309.7 219 70.3
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.2e-80 305.4 220 74.1
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.1e-77 294.7 297 56.2
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.0e-76 292.4 300 55.0
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 5.7e-67 260.0 368 42.1
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 4.1e-65 253.8 126 96.0
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 3.2e-62 244.2 174 67.8
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.3e-60 238.0 158 76.6
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 4.8e-58 230.3 114 95.6
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.1e-57 227.6 257 51.0
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 5.1e-52 210.3 399 39.3
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.0e-44 184.5 117 76.1
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 6.5e-39 166.8 137 68.6
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.6e-37 162.2 155 57.4
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.2e-35 156.0 103 68.9
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 2.0e-35 155.2 124 64.5
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 4.1e-33 147.5 147 51.0
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.9e-31 141.4 85 78.8
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 3.4e-27 127.9 83 73.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.7e-26 125.6 105 60.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 7.0e-25 120.2 130 54.6
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 1.2e-24 119.4 61 88.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.7e-24 118.2 118 54.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 5.9e-24 117.1 99 62.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.9e-22 112.1 221 30.3
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.0e-20 104.8 131 51.9
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.3e-15 88.6 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.2e-13 82.8 56 71.4
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 8.9e-12 76.6 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 2.2e-10 72.0 42 81.0
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.4e-09 68.6 38 86.8


User provided reference genes

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