Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 0.0e+00 1605.1 815 100.0
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 2.4e-156 557.0 605 53.6
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 8.9e-151 538.5 604 51.3
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 7.5e-150 535.4 605 50.4
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 2.7e-147 526.9 604 50.7
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 7.8e-147 525.4 604 51.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 8.6e-146 521.9 605 50.7
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.9e-145 520.8 607 50.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.2e-144 518.1 612 49.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.6e-144 517.7 604 49.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 4.7e-144 516.2 634 48.7
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 6.2e-144 515.8 605 50.1
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 8.1e-144 515.4 605 49.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.2e-142 511.5 612 48.4
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 1.5e-142 511.1 605 49.6
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 2.6e-142 510.4 604 49.3
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 9.9e-142 508.4 605 49.3
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 1.7e-141 507.7 605 49.4
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 2.9e-141 506.9 605 49.1
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.9e-141 506.9 605 49.4
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 1.9e-140 504.2 605 49.3
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 5.4e-140 502.7 604 48.5
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.2e-139 501.5 605 48.9
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.2e-139 501.5 680 45.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.3e-138 498.0 605 48.6
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 1.7e-138 497.7 605 48.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 3.0e-138 496.9 613 47.3
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 3.9e-138 496.5 605 47.3
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.1e-138 496.1 605 48.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.5e-137 494.6 605 48.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 3.3e-137 493.4 604 47.7
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 5.6e-137 492.7 605 49.3
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 7.3e-137 492.3 599 48.7
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 1.6e-136 491.1 606 49.0
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 3.6e-136 490.0 605 47.8
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 6.2e-136 489.2 605 47.9
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.1e-135 486.9 605 47.6
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 5.2e-135 486.1 703 43.8
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 5.2e-135 486.1 718 43.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 6.8e-135 485.7 599 48.9
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 5.8e-134 482.6 605 47.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 9.9e-134 481.9 605 47.1
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.3e-133 481.5 602 47.5
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 2.2e-133 480.7 606 46.9
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 2.9e-133 480.3 608 48.0
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 8.4e-133 478.8 605 46.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.1e-132 478.4 606 46.7
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.4e-132 477.2 605 46.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 5.4e-132 476.1 605 46.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 7.1e-132 475.7 604 46.7
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 1.6e-131 474.6 599 47.1
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 6.0e-131 472.6 605 46.8
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 3.9e-130 469.9 605 46.4
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 6.6e-130 469.2 605 47.1
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.1e-129 468.4 602 45.3
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 1.5e-129 468.0 605 46.4
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 3.3e-129 466.8 563 49.0
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 5.6e-129 466.1 605 46.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 9.6e-129 465.3 609 45.8
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 9.6e-129 465.3 570 47.9
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.8e-128 463.8 612 45.1
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 4.8e-128 463.0 604 45.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.5e-126 458.0 605 45.8
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.0e-126 457.6 608 44.9
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 1.1e-124 451.8 605 43.8
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 1.4e-124 451.4 605 44.0
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 5.4e-124 449.5 541 49.0
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 5.4e-124 449.5 605 44.1
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 1.2e-123 448.4 605 43.8
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 2.1e-123 447.6 605 44.0
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 4.6e-123 446.4 605 44.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.7e-122 444.5 605 45.0
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 3.9e-122 443.4 605 43.1
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 5.1e-122 443.0 605 43.5
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 8.7e-122 442.2 608 43.9
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.5e-121 441.4 400 58.5
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 2.5e-121 440.7 605 42.8
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 4.3e-121 439.9 605 43.6
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 9.6e-121 438.7 611 44.2
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 1.6e-120 438.0 605 44.0
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.1e-119 435.3 605 42.8
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 2.4e-119 434.1 605 42.8
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 9.0e-119 432.2 616 44.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.2e-117 427.6 613 42.7
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 3.8e-117 426.8 613 42.3
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.8e-111 407.9 614 40.7
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.0e-111 406.8 563 44.8
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.7e-109 401.4 612 41.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 2.2e-109 401.0 601 41.4
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.2e-109 401.0 601 41.4
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 8.4e-109 399.1 604 41.1
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.3e-106 391.0 605 40.8
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.7e-105 386.3 400 51.8
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 6.9e-103 379.4 613 41.1
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.4e-100 371.7 596 39.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.2e-96 357.8 554 42.6
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.1e-92 345.5 290 60.7
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 3.7e-88 330.5 311 55.6
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 5.9e-86 323.2 454 44.9
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.0e-82 310.8 757 34.9
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 4.5e-78 297.0 225 66.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.2e-77 294.7 604 35.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.0e-74 285.8 328 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 2.3e-74 284.6 328 47.0
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.3e-74 284.6 233 61.4
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.1e-73 282.3 262 54.2
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-72 278.9 608 34.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.7e-70 271.2 420 41.9
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 2.7e-67 261.2 429 41.0
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 5.9e-62 243.4 334 41.0
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 6.5e-61 240.0 283 49.8
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 3.6e-51 207.6 208 51.4
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.9e-45 187.6 144 63.9
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 6.6e-45 186.8 337 39.2
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 9.2e-39 166.4 127 66.1
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 2.3e-34 151.8 294 38.4
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 3.7e-32 144.4 311 35.4
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.2e-31 141.4 333 36.3
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 4.0e-26 124.4 93 61.3
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.1e-23 113.6 114 52.6
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.2e-14 86.3 65 64.6
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 3.5e-14 84.7 86 53.5
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.5e-14 84.7 86 53.5
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.3e-11 76.3 83 53.0
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.4e-10 72.0 80 51.2
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.5e-09 69.3 99 42.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.2e-06 59.7 44 61.4
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.2e-06 59.7 44 61.4


User provided reference genes

Program Settings