Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 7.2e-86 320.5 154 100.0
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-25 119.4 92 64.1
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-24 116.3 117 54.7
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.1e-22 110.5 140 45.0
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.3e-22 109.0 146 43.2
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 5.6e-22 108.2 137 43.8
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.6e-21 106.7 147 41.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.1e-21 106.3 138 42.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.8e-21 105.9 149 40.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.8e-21 105.9 136 45.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 6.2e-21 104.8 137 40.9
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 8.1e-21 104.4 138 42.8
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 8.1e-21 104.4 138 42.8
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 8.1e-21 104.4 147 41.5
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.1e-20 104.0 149 40.3
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.4e-20 103.6 147 39.5
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 1.8e-20 103.2 147 40.1
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.8e-20 103.2 149 40.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 2.4e-20 102.8 140 42.9
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 2.4e-20 102.8 137 42.3
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 2.4e-20 102.8 137 41.6
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 3.1e-20 102.4 136 42.6
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 4.0e-20 102.1 137 41.6
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 4.0e-20 102.1 143 40.6
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 4.0e-20 102.1 137 42.3
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 5.3e-20 101.7 147 40.1
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 5.3e-20 101.7 133 43.6
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 5.3e-20 101.7 136 41.2
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.3e-20 101.7 135 41.5
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 6.9e-20 101.3 135 42.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 6.9e-20 101.3 137 41.6
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 9.0e-20 100.9 155 37.4
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 9.0e-20 100.9 136 40.4
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 9.0e-20 100.9 137 41.6
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.2e-19 100.5 147 40.1
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.2e-19 100.5 137 43.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.2e-19 100.5 136 40.4
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.5e-19 100.1 136 40.4
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.5e-19 100.1 144 40.3
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.0e-19 99.8 137 40.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.0e-19 99.8 137 40.9
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.0e-19 99.8 135 41.5
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.0e-19 99.8 138 41.3
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.6e-19 99.4 147 40.1
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.6e-19 99.4 148 42.6
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.6e-19 99.4 147 40.1
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.6e-19 99.4 147 40.1
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.6e-19 99.4 147 40.1
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 2.6e-19 99.4 136 39.7
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.6e-19 99.4 136 40.4
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 2.6e-19 99.4 137 40.1
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 3.4e-19 99.0 139 42.4
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.4e-19 99.0 138 41.3
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 3.4e-19 99.0 136 41.2
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 3.4e-19 99.0 137 41.6
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.4e-19 99.0 136 40.4
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.4e-19 98.6 131 42.7
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 4.4e-19 98.6 139 41.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 4.4e-19 98.6 137 39.4
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 5.8e-19 98.2 137 40.1
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 5.8e-19 98.2 136 39.7
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 5.8e-19 98.2 137 38.7
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.6e-19 97.8 137 38.7
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.6e-19 97.8 137 38.7
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 7.6e-19 97.8 136 41.2
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 7.6e-19 97.8 137 40.9
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 7.6e-19 97.8 137 40.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 9.9e-19 97.4 140 39.3
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.3e-18 97.1 115 44.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-18 97.1 158 38.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-18 97.1 158 38.0
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.3e-18 97.1 136 40.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.3e-18 97.1 137 40.1
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.3e-18 97.1 135 40.0
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.7e-18 96.7 134 41.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 2.2e-18 96.3 138 39.1
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.2e-18 96.3 140 39.3
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.9e-18 95.9 115 43.5
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 3.8e-18 95.5 138 39.9
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 3.8e-18 95.5 135 39.3
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 3.8e-18 95.5 136 39.7
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 6.4e-18 94.7 140 40.7
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 6.4e-18 94.7 131 42.0
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 6.4e-18 94.7 137 37.2
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 8.4e-18 94.4 131 42.0
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.1e-17 94.0 146 37.7
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 2.4e-17 92.8 141 38.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 3.2e-17 92.4 137 40.9
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 3.2e-17 92.4 137 38.7
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 4.2e-17 92.0 125 40.0
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.3e-17 90.9 138 39.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.2e-16 90.5 138 37.7
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-16 90.5 93 54.8
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.6e-16 90.1 142 40.1
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 6.0e-16 88.2 137 38.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 7.9e-16 87.8 62 69.4
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.0e-15 87.4 148 35.1
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.3e-15 87.0 145 35.9
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 3.0e-15 85.9 117 44.4
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 8.7e-15 84.3 138 37.0
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.9e-14 83.2 178 33.1
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.5e-14 82.8 143 35.0
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 5.6e-14 81.6 159 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 9.6e-14 80.9 135 36.3
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 9.6e-14 80.9 53 73.6
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-13 80.1 74 52.7
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 3.6e-13 79.0 96 40.6
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-12 77.4 96 39.6
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.1e-12 77.4 91 45.1
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.8e-12 76.6 135 34.1
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 9.0e-12 74.3 50 72.0
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 1.5e-11 73.6 50 70.0
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.0e-11 73.2 65 55.4
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 4.5e-11 72.0 50 68.0
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 5.8e-11 71.6 75 46.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 7.6e-11 71.2 63 49.2
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 7.6e-11 71.2 144 34.0
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 9.9e-11 70.9 50 68.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 1.7e-10 70.1 49 69.4
SHI44511 Sapria himalayana HOM05D000624 ORTHO05D000495 2.2e-10 69.7 49 69.4
SHI44953 Sapria himalayana HOM05D000624 ORTHO05D000495 2.9e-10 69.3 68 51.5
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 7.1e-09 64.7 123 33.3
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.3e-09 64.3 64 48.4
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.6e-08 63.5 76 50.0
SHI23626 Sapria himalayana HOM05D000624 ORTHO05D000495 2.1e-08 63.2 57 59.6
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.5e-08 62.4 64 46.9
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.6e-08 62.0 135 34.8
SHI40829 Sapria himalayana HOM05D000624 ORTHO05D000495 7.9e-08 61.2 42 71.4
SHI52568 Sapria himalayana HOM05D000624 ORTHO05D000495 3.0e-07 59.3 57 57.9
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 6.7e-07 58.2 126 34.9
SHI17690 Sapria himalayana HOM05D000624 ORTHO05D000495 6.7e-07 58.2 57 54.4
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.1e-06 57.4 152 30.3
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-06 57.0 69 47.8
SHI05209 Sapria himalayana HOM05D000624 ORTHO05D004206 5.6e-06 55.1 44 61.4


User provided reference genes

Program Settings