Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.4e-303 1045.4 517 100.0
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 5.1e-128 462.2 452 55.8
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.1e-125 452.6 450 54.9
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 3.0e-120 436.4 449 53.5
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.6e-119 433.3 388 59.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.0e-115 421.4 282 70.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.7e-115 420.6 463 51.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.2e-115 420.2 277 72.2
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.9e-115 419.9 463 51.8
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.9e-114 417.2 262 74.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 3.2e-114 416.4 408 55.9
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.2e-114 416.4 419 54.9
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 7.2e-114 415.2 283 70.0
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.2e-113 414.5 283 70.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.2e-113 414.5 458 51.7
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.1e-113 413.7 283 70.0
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.6e-113 412.9 283 70.3
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 3.6e-113 412.9 283 70.3
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 6.1e-113 412.1 329 62.9
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 8.0e-113 411.8 291 67.7
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.8e-112 410.6 280 71.1
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 3.0e-112 409.8 315 63.2
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 4.0e-112 409.5 405 57.5
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.5e-111 407.5 464 51.5
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.5e-111 407.5 377 58.9
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.0e-111 407.1 273 69.2
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 4.4e-111 406.0 284 68.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.3e-110 404.4 261 72.0
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.2e-110 403.7 281 68.0
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 2.8e-110 403.3 256 74.2
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 4.8e-110 402.5 465 48.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 4.8e-110 402.5 394 54.8
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 6.3e-110 402.1 448 50.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 8.2e-110 401.7 274 70.1
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 8.2e-110 401.7 321 62.0
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.1e-109 401.4 260 71.5
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 1.4e-109 401.0 438 51.6
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.8e-109 400.6 253 73.5
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.4e-109 400.2 279 67.7
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.4e-109 400.2 403 55.3
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.1e-109 399.4 282 68.1
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 9.1e-109 398.3 256 73.4
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.6e-108 397.5 377 57.0
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.0e-108 397.1 267 69.7
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 2.0e-108 397.1 261 70.9
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.0e-108 397.1 267 70.8
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 3.5e-108 396.4 254 72.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.5e-108 396.4 439 51.3
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 4.5e-108 396.0 277 69.0
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 5.9e-108 395.6 256 72.7
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 7.7e-108 395.2 267 70.4
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.0e-107 394.8 252 73.0
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.0e-107 394.8 446 49.3
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 1.3e-107 394.4 284 67.3
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.7e-107 394.0 334 59.9
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.7e-107 394.0 294 67.0
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.7e-107 394.0 254 71.7
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.7e-107 394.0 256 71.1
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.2e-107 393.7 252 72.6
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.2e-107 393.7 284 67.3
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.2e-107 393.7 252 71.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.1e-106 391.3 258 71.3
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.5e-106 391.0 478 47.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.5e-106 391.0 280 66.8
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.5e-106 391.0 376 54.8
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 2.5e-106 390.2 386 56.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.2e-106 389.8 258 70.5
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 5.5e-106 389.0 284 66.9
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 5.5e-106 389.0 259 69.5
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 9.4e-106 388.3 428 51.2
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.2e-105 387.9 285 66.3
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.7e-105 386.7 282 65.6
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 3.6e-105 386.3 285 66.3
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.7e-105 386.0 282 65.2
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 6.1e-105 385.6 284 66.5
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 8.0e-105 385.2 285 64.6
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 8.0e-105 385.2 386 54.7
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.0e-104 384.8 252 71.8
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.8e-104 384.0 259 68.7
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.8e-104 384.0 281 65.1
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.3e-104 383.6 286 65.4
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.3e-104 383.6 259 69.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 4.0e-104 382.9 287 65.9
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 4.0e-104 382.9 259 69.1
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 5.2e-104 382.5 236 74.6
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.2e-104 382.5 282 63.1
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 8.8e-104 381.7 259 68.3
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 8.8e-104 381.7 284 64.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.0e-103 380.6 443 49.0
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.6e-103 380.2 258 68.6
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 2.6e-103 380.2 236 73.7
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.6e-103 380.2 309 61.2
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.7e-103 379.0 255 67.8
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.7e-103 379.0 257 69.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 7.5e-103 378.6 390 54.1
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.5e-103 378.6 280 63.9
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.3e-102 377.9 289 64.0
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.7e-102 377.5 319 60.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 2.8e-102 376.7 259 68.3
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 4.8e-102 375.9 309 60.2
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.1e-101 374.8 291 61.9
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.4e-101 373.6 261 66.7
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 7.0e-101 372.1 291 61.5
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.2e-100 371.3 258 67.8
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.9e-99 366.7 260 67.7
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.8e-99 366.3 261 67.4
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.2e-97 361.3 331 58.0
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 3.6e-97 359.8 327 58.4
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.0e-96 358.2 340 53.5
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 3.7e-94 349.7 338 57.7
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 7.0e-93 345.5 403 46.7
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 5.0e-91 339.3 276 61.2
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 7.3e-90 335.5 303 55.1
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 7.3e-90 335.5 415 46.3
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.8e-89 333.6 301 55.1
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.4e-87 326.2 260 60.8
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 7.5e-87 325.5 202 73.8
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 3.7e-86 323.2 213 67.1
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 3.7e-86 323.2 311 50.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 6.4e-78 295.8 258 57.8
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 9.2e-77 292.0 228 61.4
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.2e-76 291.6 183 72.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.0e-72 276.6 278 53.6
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 6.4e-70 269.2 293 53.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.9e-69 267.7 279 50.5
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.0e-68 262.7 182 69.8
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.0e-67 260.4 255 56.1
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 3.0e-67 260.4 175 72.0
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.3e-66 256.5 210 64.3
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 8.1e-65 252.3 251 51.8
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.4e-64 250.8 172 70.3
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.4e-64 250.8 172 70.3
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 4.0e-64 250.0 188 63.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.9e-62 243.8 232 53.9
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 3.2e-61 240.4 369 41.7
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.7e-60 237.3 211 59.2
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 9.6e-58 228.8 243 48.6
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.6e-52 211.5 191 57.6
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.8e-49 199.9 298 40.3
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 6.2e-49 199.5 173 52.0
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 3.1e-48 197.2 231 46.3
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 6.9e-48 196.1 151 64.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.2e-45 187.2 192 54.2
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.2e-45 186.8 192 54.2
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.6e-41 174.9 228 45.6
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 8.1e-41 172.6 179 48.0
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 6.9e-40 169.5 203 47.8
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.2e-38 164.5 229 40.6
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 2.7e-36 157.5 124 55.6
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 4.6e-36 156.8 123 56.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 6.9e-32 142.9 84 70.2
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.6e-28 131.7 81 71.6
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.1e-13 82.4 52 69.2
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 7.4e-10 69.7 49 59.2
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 7.4e-10 69.7 49 59.2
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 5.0e-06 57.0 148 28.4


User provided reference genes

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