Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-213 745.3 376 100.0
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 4.8e-91 339.0 176 93.8
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.8e-89 332.0 175 92.0
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.8e-89 332.0 175 92.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 7.6e-89 331.6 176 91.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 4.9e-88 328.9 175 91.4
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 8.4e-88 328.2 176 90.9
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 8.4e-88 328.2 176 90.9
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 8.4e-88 328.2 176 90.9
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-87 327.4 176 90.9
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-87 327.4 176 90.9
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-87 327.4 176 90.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.4e-87 327.4 175 91.4
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.9e-87 327.0 174 91.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.9e-87 327.0 179 89.9
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 3.2e-87 326.2 174 91.4
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 7.1e-87 325.1 176 89.8
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.1e-86 323.6 176 89.8
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.6e-86 322.4 176 88.6
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.8e-85 320.5 173 90.2
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.0e-85 319.7 173 90.2
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-85 319.7 173 90.2
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-85 319.7 173 90.2
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-85 319.7 173 90.2
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 5.1e-85 318.9 173 90.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 6.7e-85 318.5 176 88.1
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.9e-84 317.0 166 91.6
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 5.7e-84 315.5 175 86.9
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 7.4e-84 315.1 160 93.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 9.6e-84 314.7 176 86.4
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 2.1e-83 313.5 176 88.6
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 2.1e-83 313.5 175 86.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 6.3e-83 312.0 175 86.9
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 8.2e-83 311.6 175 86.9
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 8.2e-83 311.6 175 86.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.1e-82 309.7 170 87.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 3.4e-81 306.2 175 86.9
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 3.2e-79 299.7 175 83.4
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.2e-79 299.3 175 84.6
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 5.5e-79 298.9 160 90.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.3e-77 294.3 149 94.0
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.3e-77 294.3 170 84.7
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 1.9e-76 290.4 178 82.0
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 1.9e-76 290.4 178 82.0
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 7.4e-76 288.5 150 92.7
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-76 288.1 150 92.0
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-76 288.1 150 92.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.3e-75 285.4 176 79.0
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 8.2e-75 285.0 176 81.8
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.4e-74 284.3 149 91.9
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.8e-74 283.9 175 82.3
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 4.1e-74 282.7 167 84.4
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.1e-71 274.6 176 79.5
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.8e-69 267.3 148 85.8
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.9e-69 266.2 159 83.0
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 5.1e-69 265.8 151 86.8
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.1e-68 264.6 152 85.5
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 2.2e-64 250.4 125 93.6
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.2e-63 246.5 161 76.4
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 5.5e-63 245.7 139 87.1
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-59 233.8 130 84.6
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 4.1e-58 229.6 127 85.8
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-55 219.9 150 76.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.1e-54 215.7 142 76.8
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.8e-53 214.2 175 65.7
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.5e-52 208.8 110 87.3
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.3e-51 208.0 112 90.2
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 6.3e-51 205.7 192 62.0
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 6.3e-51 205.7 192 62.0
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-50 203.8 115 85.2
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 4.2e-47 193.0 115 85.2
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.6e-38 163.3 91 86.8
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-34 151.8 121 66.1
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 2.9e-27 127.1 72 87.5
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-26 124.4 91 65.9
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-23 115.2 67 80.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-22 110.9 111 56.8
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-16 91.7 53 77.4
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 8.6e-16 89.0 63 69.8
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.6e-16 89.0 54 79.6
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 3.4e-12 77.0 65 61.5
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 2.9e-11 73.9 78 53.8
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-10 72.0 40 87.5
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 1.1e-10 72.0 48 70.8
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 1.4e-10 71.6 60 65.0
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 9.2e-10 68.9 72 54.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.3e-08 64.3 33 87.9
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 3.9e-08 63.5 33 90.9
SHI05630 Sapria himalayana HOM05D003430 ORTHO05D004809 5.1e-08 63.2 32 93.8


User provided reference genes

Program Settings