Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 0.0e+00 1463.7 714 100.0
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-192 676.8 346 95.4
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 6.4e-153 545.4 385 76.4
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.4e-120 438.0 303 77.2
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.9e-118 429.9 313 74.8
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.1e-117 428.3 328 72.3
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.8e-116 423.7 321 71.7
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.4e-115 421.4 293 76.8
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.0e-113 415.2 293 76.1
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-113 414.8 314 72.9
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-113 414.8 314 72.9
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.2e-111 408.3 298 74.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.6e-111 407.9 511 51.9
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 6.0e-111 406.0 284 77.1
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-108 398.3 284 75.7
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.1e-108 397.5 284 75.7
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.8e-108 397.1 280 76.1
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.0e-106 391.0 284 75.0
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-105 388.3 324 68.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.2e-105 387.5 293 73.0
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.5e-104 384.0 284 73.9
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 7.2e-104 382.5 280 74.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.0e-102 377.1 277 73.6
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 3.0e-102 377.1 336 64.0
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 9.7e-101 372.1 284 71.1
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-100 369.0 290 70.3
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.1e-99 368.6 278 73.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 6.9e-99 365.9 280 71.4
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.5e-98 364.8 276 72.5
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.5e-98 364.8 276 72.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.0e-98 364.4 279 72.0
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.2e-97 360.9 280 71.4
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 3.8e-97 360.1 256 75.8
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 8.5e-97 359.0 274 71.9
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 8.5e-97 359.0 274 71.9
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 8.5e-97 359.0 274 71.9
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.9e-96 357.8 248 76.6
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-95 354.0 274 70.8
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.0e-94 350.5 282 69.9
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.8e-92 344.0 293 68.3
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.8e-92 343.2 256 72.7
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.4e-91 340.9 281 68.0
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 2.4e-91 340.9 269 68.8
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 2.4e-91 340.9 269 68.8
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 2.4e-91 340.9 269 68.8
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 2.4e-91 340.9 269 68.8
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 2.4e-91 340.9 269 68.8
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 2.4e-91 340.9 269 68.8
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.1e-91 340.5 261 72.0
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-90 338.6 260 71.9
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-90 338.6 260 71.9
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.5e-90 338.2 260 71.9
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.4e-90 337.0 284 67.3
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.9e-90 336.3 260 71.5
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 5.9e-90 336.3 260 71.5
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 5.9e-90 336.3 260 71.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 7.2e-88 329.3 260 70.4
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.2e-87 328.6 254 70.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.7e-87 327.4 265 67.9
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 3.6e-87 327.0 283 65.0
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.7e-84 317.0 269 65.1
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.8e-84 316.6 255 68.2
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.4e-83 314.3 256 69.1
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.0e-78 297.4 226 71.2
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 6.7e-78 296.2 230 70.4
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-74 283.1 284 60.2
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.2e-73 281.2 229 68.6
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.9e-73 280.8 224 69.6
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.9e-73 280.8 224 69.6
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.8e-68 263.5 284 56.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.1e-63 248.1 250 57.2
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 6.1e-63 246.5 154 84.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 4.4e-61 240.4 150 82.0
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 9.8e-61 239.2 253 56.9
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.9e-57 227.6 245 58.4
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-57 226.5 219 62.6
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.6e-57 226.5 178 69.1
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 4.0e-54 217.2 235 55.3
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-51 209.1 178 64.6
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.6e-50 205.3 144 77.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 7.3e-48 196.4 120 83.3
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 2.1e-47 194.9 116 83.6
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 3.1e-46 191.0 157 69.4
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.4e-45 187.2 116 81.0
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.9e-43 181.8 116 80.2
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 2.3e-41 174.9 107 85.0
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.0e-41 173.7 110 78.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-39 168.3 90 91.1
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-39 167.5 274 42.3
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 6.2e-39 166.8 109 78.9
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-38 166.0 106 82.1
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.9e-35 155.2 106 73.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.1e-35 154.1 107 74.8
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.6e-34 150.6 141 61.7
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 5.1e-33 147.1 96 79.2
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 6.6e-33 146.7 161 55.3
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-30 139.4 137 57.7
arahy.Tifrunner.gnm1.ann1.FZ2FI3 Arachis hypogaea HOM05D003430 ORTHO05D014065 1.8e-30 138.7 230 43.9
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 1.8e-30 138.7 93 78.5
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.2e-30 137.1 90 81.1
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 5.2e-30 137.1 92 79.3
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 5.2e-30 137.1 92 79.3
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.5e-29 135.6 93 77.4
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-27 128.6 75 78.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 9.2e-27 126.3 117 64.1
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.2e-23 113.6 66 83.3
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 8.9e-22 109.8 70 74.3
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 7.6e-21 106.7 74 71.6
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-20 105.1 72 70.8
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 3.2e-19 101.3 73 65.8
arahy.Tifrunner.gnm1.ann1.MDP5TU Arachis hypogaea HOM05D003430 ORTHO05D014065 4.2e-19 100.9 96 59.4
arahy.Tifrunner.gnm1.ann1.SLB19S Arachis hypogaea HOM05D003430 ORTHO05D014065 4.2e-19 100.9 96 59.4
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.6e-18 99.0 65 80.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.8e-18 96.7 57 82.5
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.9e-17 94.4 59 83.1
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-15 88.6 98 56.1
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 1.4e-14 85.9 66 65.2
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.2e-13 82.8 44 93.2
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.7e-12 79.0 52 75.0
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 5.4e-11 73.9 49 71.4
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 3.5e-10 71.2 46 73.9
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 8.7e-09 66.6 48 75.0
arahy.Tifrunner.gnm1.ann1.U8L35G Arachis hypogaea HOM05D003430 ORTHO05D014065 1.3e-07 62.8 138 37.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-06 58.2 30 86.7
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-06 58.2 30 86.7
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-06 58.2 30 86.7
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 3.1e-06 58.2 74 51.4
SHI33656 Sapria himalayana HOM05D003430 ORTHO05D004809 6.9e-06 57.0 49 59.2


User provided reference genes

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