Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29513 Sapria himalayana HOM05D001750 ORTHO05D001825 8.7e-64 246.9 133 100.0
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 1.2e-44 183.3 161 65.2
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 2.6e-44 182.2 161 64.6
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 7.7e-44 180.6 161 64.0
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 7.7e-44 180.6 161 64.0
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 1.0e-43 180.3 161 63.4
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 2.9e-43 178.7 161 63.4
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 5.0e-43 177.9 161 63.4
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 5.0e-43 177.9 161 63.4
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.0e-43 177.9 161 63.4
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 6.5e-43 177.6 161 62.7
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 8.5e-43 177.2 161 63.4
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 8.5e-43 177.2 161 63.4
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 2.5e-42 175.6 161 62.7
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 2.5e-42 175.6 161 62.7
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 4.2e-42 174.9 161 62.7
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 1.6e-41 172.9 160 62.5
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 3.6e-41 171.8 161 61.5
ECA234G2654 Erigeron canadensis HOM05D001750 ORTHO05D001825 3.6e-41 171.8 161 62.1
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.0e-41 170.6 161 62.1
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.0e-41 170.6 161 62.1
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.0e-41 170.6 161 62.1
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.0e-41 170.6 161 62.1
SHI35585 Sapria himalayana HOM05D001750 ORTHO05D001825 1.4e-40 169.9 155 62.6
FAN14G0206 Fragaria x ananassa HOM05D001750 ORTHO05D001825 3.0e-40 168.7 161 60.2
LjContig00315g0010666 Lotus japonicus HOM05D001750 ORTHO05D001825 3.9e-40 168.3 155 62.6
CDE02G3422 Ceratophyllum demersum HOM05D001750 ORTHO05D001825 6.7e-40 167.5 161 62.1
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 1.5e-39 166.4 157 61.8
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 1.5e-39 166.4 157 61.8
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.5e-39 166.4 162 61.7
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.0e-39 166.0 161 61.5
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 4.4e-39 164.9 161 60.2
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 1.3e-38 163.3 161 59.6
Lj2A1235G104 Lonicera japonica HOM05D001750 ORTHO05D001825 1.7e-38 162.9 136 67.6
Glyma.15G187600 Glycine max HOM05D001750 ORTHO05D001825 8.2e-38 160.6 153 60.8
Glyma.15G187800 Glycine max HOM05D001750 ORTHO05D001825 8.2e-38 160.6 153 60.8
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 5.3e-37 157.9 161 58.4
Atru.chr9.151 Acer truncatum HOM05D001750 ORTHO05D001825 9.1e-37 157.1 161 59.0
Actinidia34923 Actinidia chinensis HOM05D001750 ORTHO05D001825 1.9e-34 149.4 159 57.9
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 1.2e-33 146.7 161 56.5
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 1.1e-26 123.6 170 44.7
PGSC0003DMG400000928 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.1e-26 123.6 142 53.5
CAN.G1159.8 Capsicum annuum HOM05D001750 ORTHO05D001825 1.2e-25 120.2 119 57.1
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 2.7e-25 119.0 161 41.6
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.2e-23 113.6 66 84.8
Nitab4.5_0001788g0240 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.5e-23 110.9 68 80.9
Ah.02g118860 Amaranthus hybridus HOM05D001750 ORTHO05D001825 9.8e-23 110.5 66 81.8
Lalb_Chr02g0153721 Lupinus albus HOM05D001750 ORTHO05D001825 2.8e-22 109.0 77 72.7
arahy.Tifrunner.gnm1.ann1.B33B9N Arachis hypogaea HOM05D001750 ORTHO05D001825 5.4e-21 104.8 61 83.6
Nitab4.5_0000172g0100 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.0e-21 104.4 97 54.6
Psat4g179120 Pisum sativum HOM05D001750 ORTHO05D030195 7.0e-21 104.4 62 82.3
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.6e-20 103.2 112 56.2
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 1.6e-20 103.2 112 56.2
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 5.9e-20 101.3 112 55.4
SHI09895 Sapria himalayana HOM05D001750 ORTHO05D001825 5.0e-19 98.2 63 81.0
arahy.Tifrunner.gnm1.ann1.KHE2M7 Arachis hypogaea HOM05D001750 ORTHO05D001825 8.6e-19 97.4 112 54.5
CSS0000875 Camellia sinensis var. sinensis HOM05D001750 ORTHO05D001825 1.9e-18 96.3 131 51.1
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 1.6e-17 93.2 112 51.8
Nitab4.5_0000085g0160 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.8e-16 89.7 142 45.1
MD13G1126900 Malus domestica HOM05D001750 ORTHO05D001825 3.0e-16 89.0 58 81.0
Haze_27121 Corylus avellana HOM05D001750 ORTHO05D001825 8.9e-16 87.4 161 35.4
PGSC0003DMG400029023 Solanum tuberosum HOM05D001750 ORTHO05D001825 8.9e-16 87.4 112 50.9
SHI16092 Sapria himalayana HOM05D001750 ORTHO05D001825 3.4e-15 85.5 99 52.5
Migut.J01211 Erythranthe guttata HOM05D001750 ORTHO05D001825 2.2e-14 82.8 55 74.5
Migut.O00324 Erythranthe guttata HOM05D001750 ORTHO05D001825 4.9e-14 81.6 50 78.0
Nitab4.5_0001152g0320 Nicotiana tabacum HOM05D001750 ORTHO05D001825 4.9e-14 81.6 50 80.0
Psat7g150640 Pisum sativum HOM05D001750 ORTHO05D001825 8.3e-14 80.9 57 77.2
Potri.015G051300 Populus trichocarpa HOM05D001750 ORTHO05D001825 4.1e-13 78.6 50 74.0
Nitab4.5_0001152g0250 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.2e-12 77.0 58 72.4
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.0e-12 76.3 57 71.9
QL06p024879 Quercus lobata HOM05D001750 ORTHO05D001825 2.7e-12 75.9 112 46.4
Lalb_Chr02g0153711 Lupinus albus HOM05D001750 ORTHO05D001825 4.5e-12 75.1 56 71.4
SalBow5G4482 Salvia bowleyana HOM05D001750 ORTHO05D001825 6.6e-11 71.2 51 72.5
Solyc10g080120.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-09 65.9 49 65.3
Nitab4.5_0000172g2270 Nicotiana tabacum HOM05D001750 ORTHO05D012795 8.0e-09 64.3 39 79.5
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.0e-08 63.9 44 79.5
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-08 63.2 130 34.6
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 5.2e-08 61.6 58 56.9
Peaxi162Scf00111g00125 Petunia axillaris HOM05D000478 ORTHO05D000345 8.9e-08 60.8 50 68.0
Gohir.A09G068300 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.0e-07 59.7 36 77.8
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 3.4e-07 58.9 56 58.9
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-07 58.5 130 34.6
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 5.8e-07 58.2 154 31.2
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 5.8e-07 58.2 154 31.2
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 7.5e-07 57.8 154 31.2
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 9.8e-07 57.4 154 31.8
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 9.8e-07 57.4 154 31.8
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 1.3e-06 57.0 154 31.2
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-06 56.6 154 30.5
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.7e-06 56.6 119 34.5
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 2.2e-06 56.2 154 29.9
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.9e-06 55.1 154 29.2
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 4.9e-06 55.1 154 29.2
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 4.9e-06 55.1 154 29.2
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.9e-06 55.1 154 29.2
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.9e-06 55.1 154 29.9
Lsat_1_v5_gn_4_66441 Lactuca sativa HOM05D001750 ORTHO05D001825 6.4e-06 54.7 37 78.4
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 6.4e-06 54.7 154 29.2
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 6.4e-06 54.7 154 29.2
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 6.4e-06 54.7 154 29.2
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 29.9
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 29.9
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 29.9
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 30.5
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 30.5
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 30.5
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 8.3e-06 54.3 154 29.9
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 8.3e-06 54.3 169 28.4


User provided reference genes

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