Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29408 Sapria himalayana HOM05D003128 ORTHO05D004333 2.2e-57 225.3 109 100.0
SHI22052 Sapria himalayana HOM05D007949 ORTHO05D000027 7.8e-18 94.0 58 75.9
SHI36172 Sapria himalayana HOM05D000049 ORTHO05D000027 2.9e-17 92.0 83 53.0
SHI38760 Sapria himalayana HOM05D002203 ORTHO05D000027 4.3e-16 88.2 69 60.9
SHI30002 Sapria himalayana HOM05D000854 ORTHO05D000027 1.0e-09 67.0 37 75.7
SHI51116 Sapria himalayana HOM05D000854 ORTHO05D000778 1.0e-09 67.0 36 77.8
SHI38769 Sapria himalayana HOM05D000854 ORTHO05D000027 1.3e-09 66.6 40 72.5
SHI44560 Sapria himalayana HOM05D000854 ORTHO05D000778 1.7e-09 66.2 37 75.7
SHI48309 Sapria himalayana HOM05D000854 ORTHO05D000778 1.7e-09 66.2 37 78.4
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 3.0e-09 65.5 39 82.1
SHI43221 Sapria himalayana HOM05D007949 ORTHO05D010250 1.1e-08 63.5 41 68.3
SHI49037 Sapria himalayana HOM05D000854 ORTHO05D000778 1.1e-08 63.5 37 70.3
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 1.9e-08 62.8 39 71.8
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 1.9e-08 62.8 39 71.8
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 2.5e-08 62.4 39 71.8
SHI09800 Sapria himalayana HOM05D003107 ORTHO05D003092 2.5e-08 62.4 37 75.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 2.5e-08 62.4 39 71.8
EL10Ac3g06887 Beta vulgaris HOM05D003128 ORTHO05D004333 4.3e-08 61.6 39 69.2
SHI39228 Sapria himalayana HOM05D003128 ORTHO05D000778 4.3e-08 61.6 39 76.9
SHI45136 Sapria himalayana HOM05D003128 ORTHO05D004333 4.3e-08 61.6 50 64.0
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 5.6e-08 61.2 39 71.8
SHI46487 Sapria himalayana HOM05D000854 ORTHO05D000778 7.3e-08 60.8 37 70.3
SHI46731 Sapria himalayana HOM05D000854 ORTHO05D365435 7.3e-08 60.8 37 70.3
SHI48834 Sapria himalayana HOM05D008459 ORTHO05D003903 7.3e-08 60.8 39 76.9
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 9.5e-08 60.5 39 69.2
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 1.2e-07 60.1 39 66.7
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.2e-07 60.1 39 66.7
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.2e-07 60.1 39 66.7
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.2e-07 60.1 39 66.7
SHI00989 Sapria himalayana HOM05D000624 ORTHO05D000495 1.6e-07 59.7 37 75.7
SHI43243 Sapria himalayana HOM05D000854 ORTHO05D000027 1.6e-07 59.7 43 62.8
SHI49623 Sapria himalayana HOM05D000854 ORTHO05D003903 2.1e-07 59.3 36 69.4
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 2.1e-07 59.3 39 66.7
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 64.1
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 64.1
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 66.7
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 66.7
MBI01_g28993_MAGBIO Magnolia biondii HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 69.2
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 66.7
SHI29341 Sapria himalayana HOM05D000624 ORTHO05D000027 2.8e-07 58.9 36 72.2
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 2.8e-07 58.9 39 66.7
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 3.6e-07 58.5 39 66.7
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 3.6e-07 58.5 41 61.0
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 3.6e-07 58.5 39 71.8
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 4.7e-07 58.2 37 75.7
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.7e-07 58.2 38 63.2
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.7e-07 58.2 38 63.2
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 4.7e-07 58.2 39 66.7
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 61.5
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 64.1
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 64.1
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 64.1
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 64.1
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 64.1
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 6.2e-07 57.8 38 63.2
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 6.2e-07 57.8 38 63.2
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 6.2e-07 57.8 39 59.0
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 8.0e-07 57.4 39 61.5
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 8.0e-07 57.4 39 61.5
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 8.0e-07 57.4 39 61.5
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 8.0e-07 57.4 39 64.1
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 8.0e-07 57.4 39 64.1
SHI09338 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-07 57.4 39 74.4
SHI39182 Sapria himalayana HOM05D000854 ORTHO05D000778 8.0e-07 57.4 36 66.7
SHI39682 Sapria himalayana HOM05D000854 ORTHO05D367998 8.0e-07 57.4 31 74.2
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 66.7
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
SHI35280 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-06 57.0 36 72.2
SHI38883 Sapria himalayana HOM05D000854 ORTHO05D364799 1.1e-06 57.0 41 61.0
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 1.1e-06 57.0 39 64.1
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 1.4e-06 56.6 39 64.1
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 1.4e-06 56.6 39 61.5
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.8e-06 56.2 39 61.5
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.8e-06 56.2 37 64.9
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.8e-06 56.2 38 63.2
Actinidia04640 Actinidia chinensis HOM05D003128 ORTHO05D004333 2.3e-06 55.8 64 46.9
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 3.1e-06 55.5 39 61.5
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 3.1e-06 55.5 39 61.5
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 3.1e-06 55.5 39 69.2
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 4.0e-06 55.1 39 61.5
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 4.0e-06 55.1 39 61.5
SHI20840 Sapria himalayana HOM05D000624 ORTHO05D364646 4.0e-06 55.1 41 65.9
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 5.2e-06 54.7 39 61.5
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 5.2e-06 54.7 39 59.0
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 5.2e-06 54.7 39 61.5
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 5.2e-06 54.7 39 59.0
Manes.12G144101 Manihot esculenta HOM05D003128 ORTHO05D004333 6.8e-06 54.3 39 61.5
SHI15795 Sapria himalayana HOM05D000854 ORTHO05D364911 6.8e-06 54.3 31 74.2
SHI32949 Sapria himalayana HOM05D000624 ORTHO05D000495 6.8e-06 54.3 37 73.0
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 8.9e-06 53.9 39 64.1
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.9e-06 53.9 39 64.1
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.9e-06 53.9 39 64.1
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 8.9e-06 53.9 38 57.9
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 8.9e-06 53.9 39 53.8


User provided reference genes

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