Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29329 Sapria himalayana HOM05D000842 ORTHO05D000650 2.7e-112 408.7 207 100.0
SHI27567 Sapria himalayana HOM05D000842 ORTHO05D000650 2.0e-59 233.0 247 57.5
SHI20462 Sapria himalayana HOM05D000842 ORTHO05D000650 3.8e-50 202.2 179 65.4
SHI29326 Sapria himalayana HOM05D000842 ORTHO05D000650 1.0e-39 167.5 212 50.5
SHI23907 Sapria himalayana HOM05D000842 ORTHO05D000650 2.6e-30 136.3 110 69.1
Sc03g0010740 Simmondsia chinensis HOM05D000842 ORTHO05D000650 5.8e-22 108.6 257 36.6
CsaV3_4G032790 Cucumis sativus L. HOM05D000842 ORTHO05D000650 4.9e-21 105.5 257 35.0
SHI30500 Sapria himalayana HOM05D000842 ORTHO05D000650 4.9e-21 105.5 133 51.9
MELO3C025674.2 Cucumis melo HOM05D000842 ORTHO05D000650 1.9e-20 103.6 257 35.0
Actinidia12607 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.2e-19 100.9 257 33.5
ClCG11G017130 Citrullus lanatus HOM05D000842 ORTHO05D000650 1.2e-19 100.9 257 34.6
Ciclev10021239m.g Citrus clementina HOM05D000842 ORTHO05D000650 2.1e-19 100.1 258 33.7
Sed0020191 Sechium edule HOM05D000842 ORTHO05D000650 2.7e-19 99.8 249 33.7
CiPaw.12G110100 Carya illinoinensis HOM05D000842 ORTHO05D000650 3.5e-19 99.4 257 33.9
Dinv26701 Davidia involucrata HOM05D000842 ORTHO05D000650 4.6e-19 99.0 257 33.9
Prupe.4G155500 Prunus persica HOM05D000842 ORTHO05D000650 1.0e-18 97.8 233 36.5
MD11G1271000 Malus domestica HOM05D000842 ORTHO05D000650 1.3e-18 97.4 233 34.8
CSS0006711 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 1.7e-18 97.1 257 33.9
Sabra16G0252400 Salix brachista HOM05D000842 ORTHO05D000650 1.7e-18 97.1 257 33.1
Hma1.2p1_0713F.1_g207890 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 3.9e-18 95.9 257 34.2
Potri.001G382700 Populus trichocarpa HOM05D000842 ORTHO05D000650 3.9e-18 95.9 253 33.2
QL08p024827 Quercus lobata HOM05D000842 ORTHO05D000650 3.9e-18 95.9 261 34.1
Eucgr.F03229 Eucalyptus grandis HOM05D000842 ORTHO05D000650 8.6e-18 94.7 258 33.3
Manes.03G078500 Manihot esculenta HOM05D000842 ORTHO05D000650 1.9e-17 93.6 257 33.1
MD03G1250800 Malus domestica HOM05D000842 ORTHO05D000650 2.5e-17 93.2 233 33.9
Haze_08444 Corylus avellana HOM05D000842 ORTHO05D000650 2.1e-16 90.1 234 34.2
Cfa019507 Carpinus fangiana HOM05D000842 ORTHO05D000650 2.8e-16 89.7 234 35.0
Dinv13354 Davidia involucrata HOM05D000842 ORTHO05D000650 8.1e-16 88.2 256 32.8
Lsat_1_v5_gn_7_100260 Lactuca sativa HOM05D000842 ORTHO05D000650 1.8e-15 87.0 257 32.3
TAR629G1485 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.8e-15 87.0 259 32.0
VMungo1080G0610 Vigna mungo HOM05D000842 ORTHO05D000650 1.8e-15 87.0 222 33.3
CSS0037827 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 3.1e-15 86.3 257 32.7
THA.LOC104822582 Tarenaya hassleriana HOM05D000842 ORTHO05D000650 4.0e-15 85.9 255 31.0
FAN21G0331 Fragaria x ananassa HOM05D000842 ORTHO05D000650 5.2e-15 85.5 233 33.0
FAN25G0524 Fragaria x ananassa HOM05D000842 ORTHO05D000650 5.2e-15 85.5 238 32.8
PGR031G0859 Punica granatum HOM05D000842 ORTHO05D000650 5.2e-15 85.5 257 31.9
FvH4_3g17610 Fragaria vesca HOM05D000842 ORTHO05D000650 6.8e-15 85.1 233 32.6
FAN16G3507 Fragaria x ananassa HOM05D000842 ORTHO05D000650 6.8e-15 85.1 233 32.6
TAR627G1038 Trochodendron aralioides HOM05D000842 ORTHO05D000650 8.9e-15 84.7 224 33.0
Peaxi162Scf00111g10127 Petunia axillaris HOM05D000842 ORTHO05D000650 1.2e-14 84.3 252 32.9
RcHm_v2.0_Chr5g0029311 Rosa chinensis HOM05D000842 ORTHO05D000650 1.2e-14 84.3 233 32.6
Phvul.005G039800 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 1.5e-14 84.0 222 33.3
Lj1A822T52 Lonicera japonica HOM05D000842 ORTHO05D000650 2.6e-14 83.2 244 31.6
Nn3g20957 Nelumbo nucifera HOM05D000842 ORTHO05D000650 3.4e-14 82.8 252 30.6
Cc05_g10630 Coffea canephora HOM05D000842 ORTHO05D000650 4.4e-14 82.4 257 31.5
FAN11G0959 Fragaria x ananassa HOM05D000842 ORTHO05D000650 5.8e-14 82.0 233 32.2
Nn6g34387 Nelumbo nucifera HOM05D000842 ORTHO05D000650 5.8e-14 82.0 257 31.1
Ca_02945_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 7.6e-14 81.6 220 31.4
TWI38G0350 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 7.6e-14 81.6 258 31.8
CiPaw.11G155400 Carya illinoinensis HOM05D000842 ORTHO05D000650 1.7e-13 80.5 256 32.4
TWI39G0754 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 1.7e-13 80.5 258 32.2
Nitab4.5_0001140g0080 Nicotiana tabacum HOM05D000842 ORTHO05D000650 2.2e-13 80.1 252 32.5
Nitab4.5_0003618g0010 Nicotiana tabacum HOM05D000842 ORTHO05D000650 2.2e-13 80.1 252 32.1
SHI23906 Sapria himalayana HOM05D000842 ORTHO05D000650 2.2e-13 80.1 60 70.0
arahy.Tifrunner.gnm1.ann1.B9TNKV Arachis hypogaea HOM05D000842 ORTHO05D000650 2.9e-13 79.7 257 31.1
Glyma.08G149000 Glycine max HOM05D000842 ORTHO05D000650 2.9e-13 79.7 224 32.6
Glyma.15G269300 Glycine max HOM05D000842 ORTHO05D000650 2.9e-13 79.7 264 31.4
Sp3g12980 Schrenkiella parvula HOM05D000842 ORTHO05D000650 2.9e-13 79.7 253 33.2
Medtr2g060900 Medicago truncatula HOM05D000842 ORTHO05D000650 3.8e-13 79.3 216 31.9
TPR.G11742 Trifolium pratense HOM05D000842 ORTHO05D000650 3.8e-13 79.3 216 31.0
Ah.04g161920 Amaranthus hybridus HOM05D000842 ORTHO05D000650 6.4e-13 78.6 263 30.8
CARHR089690 Cardamine hirsuta HOM05D000842 ORTHO05D000650 6.4e-13 78.6 257 32.3
Thhalv10021120m.g Eutrema salsugineum HOM05D000842 ORTHO05D000650 1.4e-12 77.4 259 32.4
Psat1g128080 Pisum sativum HOM05D000842 ORTHO05D000650 1.4e-12 77.4 216 30.6
arahy.Tifrunner.gnm1.ann1.68BB74 Arachis hypogaea HOM05D000842 ORTHO05D000650 1.9e-12 77.0 254 30.7
Solyc07g062110.3 Solanum lycopersicum HOM05D000842 ORTHO05D000650 1.9e-12 77.0 249 31.7
DCAR_019619 Daucus carota HOM05D000842 ORTHO05D000650 2.4e-12 76.6 258 30.2
TWI38G0621 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 7.1e-12 75.1 244 31.1
GSVIVG01021318001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.2e-11 74.3 258 30.6
AT3G14750 Arabidopsis thaliana HOM05D000842 ORTHO05D000650 2.1e-11 73.6 253 30.4
BcaB06g25359 Brassica carinata HOM05D000842 ORTHO05D000650 2.7e-11 73.2 217 32.7
Carub.0003s1442 Capsella rubella HOM05D000842 ORTHO05D000650 3.5e-11 72.8 253 29.6
Lj3g0009813 Lotus japonicus HOM05D000842 ORTHO05D000650 3.5e-11 72.8 209 31.6
HanXRQChr15g0495361 Helianthus annuus HOM05D000842 ORTHO05D000650 6.0e-11 72.0 258 30.2
AL3G27060 Arabidopsis lyrata HOM05D000842 ORTHO05D000650 7.8e-11 71.6 257 30.4
Sopen07g030370 Solanum pennellii HOM05D000842 ORTHO05D000650 1.3e-10 70.9 249 30.1
CAN.G375.55 Capsicum annuum HOM05D000842 ORTHO05D000650 3.0e-10 69.7 257 30.0
CDE01G0231 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 3.0e-10 69.7 227 29.5
EL10Ac4g08436 Beta vulgaris HOM05D000842 ORTHO05D000650 5.1e-10 68.9 264 28.4
Aa31LG8G1970 Aethionema arabicum HOM05D000842 ORTHO05D000650 6.6e-10 68.6 269 30.5
CDE12G0673 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 8.7e-10 68.2 222 28.4
SHI29323 Sapria himalayana HOM05D000842 ORTHO05D000650 1.1e-09 67.8 60 61.7
SHI39231 Sapria himalayana HOM05D000842 ORTHO05D000650 1.1e-09 67.8 60 61.7
Cpa.g.sc682.3 Carica papaya HOM05D000842 ORTHO05D000650 1.5e-09 67.4 116 38.8
Gohir.D01G037700 Gossypium hirsutum HOM05D000842 ORTHO05D000650 1.5e-09 67.4 182 33.0
Gorai.002G046000 Gossypium raimondii HOM05D000842 ORTHO05D000650 1.5e-09 67.4 182 33.0
A05p34700 Brassica napus HOM05D000842 ORTHO05D000650 1.9e-09 67.0 223 31.8
ECA236G2583 Erigeron canadensis HOM05D000842 ORTHO05D000650 2.5e-09 66.6 266 29.7
COL.COLO4_03606 Corchorus olitorius HOM05D000842 ORTHO05D000650 3.3e-09 66.2 182 33.0
Gohir.A01G047000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 4.3e-09 65.9 180 32.8
PSO541G2069 Papaver somniferum HOM05D000842 ORTHO05D000650 5.6e-09 65.5 228 27.2
Thecc.07G134900 Theobroma cacao HOM05D000842 ORTHO05D000650 5.6e-09 65.5 180 35.0
BraA05t22286Z Brassica rapa HOM05D000842 ORTHO05D000650 9.6e-09 64.7 223 31.4
BcaC05g29039 Brassica carinata HOM05D000842 ORTHO05D000650 1.2e-08 64.3 190 32.1
BolC5t33933H Brassica oleracea HOM05D000842 ORTHO05D000650 1.2e-08 64.3 190 32.1
C05p52500 Brassica napus HOM05D000842 ORTHO05D000650 1.6e-08 63.9 190 32.1
Atru.chr2.1899 Acer truncatum HOM05D000842 ORTHO05D000650 2.8e-08 63.2 184 31.5
Actinidia00874 Actinidia chinensis HOM05D000842 ORTHO05D000650 2.8e-08 63.2 205 30.2
Gohir.A04G045400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 8.1e-08 61.6 179 32.4
Gohir.D05G337400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 8.1e-08 61.6 179 32.4
Gorai.009G361700 Gossypium raimondii HOM05D000842 ORTHO05D000650 8.1e-08 61.6 179 32.4
Aqoxy4G00170 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 1.1e-07 61.2 188 29.8
SGA_v2.0_scaffold130G34257 Striga asiatica HOM05D000842 ORTHO05D000650 4.0e-07 59.3 254 26.8
CDE04G0048 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 5.3e-07 58.9 188 31.4
GSVIVG01014086001 Vitis vinifera HOM05D000842 ORTHO05D000650 6.9e-07 58.5 262 26.7
Lalb_Chr01g0015161 Lupinus albus HOM05D000842 ORTHO05D000650 1.2e-06 57.8 261 26.8
AUR62013943 Chenopodium quinoa HOM05D000842 ORTHO05D000650 3.4e-06 56.2 227 28.6
SEGI_10988 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 3.4e-06 56.2 255 27.5
MSTRG.14253 Avicennia marina HOM05D000842 ORTHO05D000650 5.8e-06 55.5 254 28.0
ClCG03G000280 Citrullus lanatus HOM05D000842 ORTHO05D000650 7.6e-06 55.1 220 25.5
SHI30994 Sapria himalayana HOM05D000842 ORTHO05D000650 7.6e-06 55.1 75 49.3
AUR62019667 Chenopodium quinoa HOM05D000842 ORTHO05D000650 9.9e-06 54.7 227 27.8
Ciclev10028985m.g Citrus clementina HOM05D000842 ORTHO05D000650 9.9e-06 54.7 190 26.8
QL01p040006 Quercus lobata HOM05D000842 ORTHO05D000650 9.9e-06 54.7 189 27.5


User provided reference genes

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