Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29212 Sapria himalayana HOM05D004307 ORTHO05D005068 1.3e-50 202.6 95 100.0
TWI77G0335 Tripterygium wilfordii HOM05D004307 ORTHO05D005068 1.1e-31 139.8 77 84.4
DCAR_013583 Daucus carota HOM05D004307 ORTHO05D005068 5.3e-31 137.5 77 83.1
Sed0006443 Sechium edule HOM05D004307 ORTHO05D005068 7.0e-31 137.1 77 81.8
Cpa.g.sc92.12 Carica papaya HOM05D004307 ORTHO05D005068 9.1e-31 136.7 77 80.5
Cpa.g.sc92.13 Carica papaya HOM05D003478 ORTHO05D004196 9.1e-31 136.7 77 80.5
Haze_19902 Corylus avellana HOM05D004307 ORTHO05D005068 1.6e-30 136.0 88 71.6
FAN05G2241 Fragaria x ananassa HOM05D004307 ORTHO05D005068 2.6e-30 135.2 79 75.9
FAN14G1649 Fragaria x ananassa HOM05D004307 ORTHO05D005068 2.6e-30 135.2 79 75.9
Hma1.2p1_0247F.1_g101890 Hydrangea macrophylla HOM05D004307 ORTHO05D005068 2.6e-30 135.2 77 81.8
CsaV3_3G039220 Cucumis sativus L. HOM05D004307 ORTHO05D005068 4.5e-30 134.4 77 80.5
MELO3C009666.2 Cucumis melo HOM05D004307 ORTHO05D005068 7.7e-30 133.7 77 80.5
Prupe.7G067200 Prunus persica HOM05D004307 ORTHO05D005068 7.7e-30 133.7 77 77.9
THA.LOC104802308 Tarenaya hassleriana HOM05D004307 ORTHO05D005068 7.7e-30 133.7 77 77.9
TPR.G29928 Trifolium pratense HOM05D004307 ORTHO05D005068 7.7e-30 133.7 77 77.9
TWI74G0086 Tripterygium wilfordii HOM05D004307 ORTHO05D005068 7.7e-30 133.7 77 83.1
Glyma.02G181500 Glycine max HOM05D004307 ORTHO05D005068 1.0e-29 133.3 77 79.2
CiPaw.09G035400 Carya illinoinensis HOM05D004307 ORTHO05D005068 1.3e-29 132.9 77 77.9
SGA_v2.0_scaffold105G30444 Striga asiatica HOM05D004307 ORTHO05D005068 1.3e-29 132.9 77 79.2
vmacro09093 Vaccinium macrocarpon HOM05D004307 ORTHO05D005068 1.3e-29 132.9 77 79.2
Phvul.007G255200 Phaseolus vulgaris HOM05D004307 ORTHO05D005068 1.7e-29 132.5 77 77.9
Hund24740 Selenicereus undatus HOM05D004307 ORTHO05D005068 1.7e-29 132.5 77 77.9
CARHR167930 Cardamine hirsuta HOM05D004307 ORTHO05D005068 2.2e-29 132.1 77 75.3
Dinv18083 Davidia involucrata HOM05D004307 ORTHO05D005068 2.2e-29 132.1 77 77.9
FAN02G1024 Fragaria x ananassa HOM05D004307 ORTHO05D005068 2.2e-29 132.1 79 74.7
MD14G1067400 Malus domestica HOM05D004307 ORTHO05D005068 2.2e-29 132.1 77 75.3
PGR004G0326 Punica granatum HOM05D004307 ORTHO05D005068 2.2e-29 132.1 77 77.9
QL07p021650 Quercus lobata HOM05D004307 ORTHO05D005068 2.2e-29 132.1 77 77.9
Ciclev10004353m.g Citrus clementina HOM05D004307 ORTHO05D005068 2.9e-29 131.7 77 76.6
MD12G1066900 Malus domestica HOM05D004307 ORTHO05D005068 2.9e-29 131.7 77 75.3
Ca_26681_v3 Cicer arietinum L. HOM05D004307 ORTHO05D005068 3.8e-29 131.3 77 76.6
Thhalv10005794m.g Eutrema salsugineum HOM05D004307 ORTHO05D005068 3.8e-29 131.3 77 75.3
Glyma.10G099700 Glycine max HOM05D004307 ORTHO05D005068 3.8e-29 131.3 77 77.9
TAR623G0503 Trochodendron aralioides HOM05D004307 ORTHO05D005068 3.8e-29 131.3 77 77.9
CiPaw.10G031500 Carya illinoinensis HOM05D004307 ORTHO05D005068 5.0e-29 131.0 77 76.6
Dinv18082 Davidia involucrata HOM05D004307 ORTHO05D005068 5.0e-29 131.0 77 76.6
BcaC07g40358 Brassica carinata HOM05D004307 ORTHO05D005068 6.5e-29 130.6 77 76.6
A09p50490 Brassica napus HOM05D004307 ORTHO05D005068 6.5e-29 130.6 77 76.6
BraA09t40500Z Brassica rapa HOM05D004307 ORTHO05D005068 6.5e-29 130.6 77 76.6
Eucgr.A02396 Eucalyptus grandis HOM05D004307 ORTHO05D005068 6.5e-29 130.6 77 75.3
Lj5g0012411 Lotus japonicus HOM05D004307 ORTHO05D005068 6.5e-29 130.6 77 75.3
Actinidia38565 Actinidia chinensis HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 76.6
CSS0019674 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 77.9
CSS0038023 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 77.9
CANSAT80G0325 Cannabis sativa HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 76.6
Glyma.03G139300 Glycine max HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 79.2
Lalb_Chr02g0156371 Lupinus albus HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 75.3
Psat6g126960 Pisum sativum HOM05D004307 ORTHO05D005068 8.5e-29 130.2 77 76.6
Aa31LG10G12420 Aethionema arabicum HOM05D004307 ORTHO05D005068 1.1e-28 129.8 77 75.3
AL5G39210 Arabidopsis lyrata HOM05D004307 ORTHO05D005068 1.1e-28 129.8 77 74.0
AT3G57630 Arabidopsis thaliana HOM05D004307 ORTHO05D005068 1.1e-28 129.8 77 74.0
arahy.Tifrunner.gnm1.ann1.6VN1VE Arachis hypogaea HOM05D004307 ORTHO05D005068 1.1e-28 129.8 77 75.3
HanXRQChr15g0491231 Helianthus annuus HOM05D004307 ORTHO05D005068 1.1e-28 129.8 77 76.6
RcHm_v2.0_Chr3g0481191 Rosa chinensis HOM05D004307 ORTHO05D005068 1.1e-28 129.8 77 76.6
FvH4_6g23260 Fragaria vesca HOM05D004307 ORTHO05D005068 1.5e-28 129.4 76 75.0
Sed0010803 Sechium edule HOM05D004307 ORTHO05D005068 1.5e-28 129.4 77 77.9
Thecc.05G161800 Theobroma cacao HOM05D004307 ORTHO05D005068 1.5e-28 129.4 77 75.3
Lsat_1_v5_gn_9_27501 Lactuca sativa HOM05D004307 ORTHO05D005068 1.9e-28 129.0 77 75.3
Manes.09G028900 Manihot esculenta HOM05D004307 ORTHO05D005068 1.9e-28 129.0 79 75.9
Atru.chr1.1037 Acer truncatum HOM05D004307 ORTHO05D005068 2.5e-28 128.6 77 77.9
ClCG10G017170 Citrullus lanatus HOM05D004307 ORTHO05D005068 2.5e-28 128.6 77 77.9
Lj2C379G3 Lonicera japonica HOM05D004307 ORTHO05D005068 2.5e-28 128.6 77 76.6
GSVIVG01033325001 Vitis vinifera HOM05D004307 ORTHO05D005068 2.5e-28 128.6 77 77.9
Ah.04g151900 Amaranthus hybridus HOM05D004307 ORTHO05D005068 3.2e-28 128.3 77 76.6
CDE05G2581 Ceratophyllum demersum HOM05D004307 ORTHO05D005068 3.2e-28 128.3 78 74.4
Oeu033778.1 Olea europaea HOM05D004307 ORTHO05D005068 3.2e-28 128.3 77 75.3
Sp5g04990 Schrenkiella parvula HOM05D004307 ORTHO05D005068 3.2e-28 128.3 77 72.7
Lalb_Chr05g0213601 Lupinus albus HOM05D004307 ORTHO05D005068 4.2e-28 127.9 78 73.1
C08p33190 Brassica napus HOM05D004307 ORTHO05D005068 5.5e-28 127.5 77 75.3
BolC8t50921H Brassica oleracea HOM05D004307 ORTHO05D005068 5.5e-28 127.5 77 75.3
Carub.0005s2447 Capsella rubella HOM05D004307 ORTHO05D005068 5.5e-28 127.5 77 71.4
VMungo0720G0406 Vigna mungo HOM05D004307 ORTHO05D005068 5.5e-28 127.5 77 76.6
ATR0605G138 Amborella trichopoda HOM05D004307 ORTHO05D005068 9.4e-28 126.7 79 73.4
Oeu008132.1 Olea europaea HOM05D004307 ORTHO05D005068 9.4e-28 126.7 77 74.0
PSO675G4641 Papaver somniferum HOM05D004307 ORTHO05D005068 9.4e-28 126.7 77 74.0
Aqoxy1G00236 Aquilegia oxysepala HOM05D004307 ORTHO05D005068 1.2e-27 126.3 77 75.3
PSO541G4071 Papaver somniferum HOM05D004307 ORTHO05D005068 1.2e-27 126.3 77 72.7
unitig_578.g15987 Utricularia gibba HOM05D004307 ORTHO05D005068 1.2e-27 126.3 77 74.0
Duzib106G0148 Durio zibethinus HOM05D004307 ORTHO05D005068 1.6e-27 125.9 77 71.4
Gohir.A09G124100 Gossypium hirsutum HOM05D004307 ORTHO05D005068 1.6e-27 125.9 77 71.4
Rhsim04G0099800 Rhododendron simsii HOM05D004307 ORTHO05D005068 1.6e-27 125.9 77 75.3
AUR62025994 Chenopodium quinoa HOM05D004307 ORTHO05D005068 2.1e-27 125.6 77 75.3
Medtr1g052730 Medicago truncatula HOM05D004307 ORTHO05D005068 2.1e-27 125.6 77 74.0
Nitab4.5_0004660g0040 Nicotiana tabacum HOM05D004307 ORTHO05D005068 2.1e-27 125.6 77 75.3
PGSC0003DMG400019789 Solanum tuberosum HOM05D004307 ORTHO05D005068 2.1e-27 125.6 77 75.3
MSTRG.6447 Avicennia marina HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 71.4
EL10Ac3g07020 Beta vulgaris HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 74.0
CAN.G77.1 Capsicum annuum HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 74.0
Ca_26767_v3 Cicer arietinum L. HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 74.0
Nn2g15471 Nelumbo nucifera HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 72.7
Nitab4.5_0002220g0030 Nicotiana tabacum HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 75.3
SalBow6G2199 Salvia bowleyana HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 71.4
Solyc03g063750.3 Solanum lycopersicum HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 75.3
Sopen03g017080 Solanum pennellii HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 75.3
Zm00001eb402060 Zea mays HOM05D004307 ORTHO05D005068 2.7e-27 125.2 77 72.7
MBI04_g28751_MAGBIO Magnolia biondii HOM05D004307 ORTHO05D005068 3.6e-27 124.8 77 72.7
Potri.006G054800 Populus trichocarpa HOM05D004307 ORTHO05D005068 3.6e-27 124.8 77 72.7
AUR62024400 Chenopodium quinoa HOM05D004307 ORTHO05D005068 4.7e-27 124.4 77 74.0
ECA247G2115 Erigeron canadensis HOM05D003478 ORTHO05D005068 4.7e-27 124.4 77 74.0
Peaxi162Scf00650g00226 Petunia axillaris HOM05D004307 ORTHO05D005068 4.7e-27 124.4 77 75.3
Cc06_g16610 Coffea canephora HOM05D004307 ORTHO05D005068 6.1e-27 124.0 77 72.7
COL.COLO4_28671 Corchorus olitorius HOM05D004307 ORTHO05D005068 8.0e-27 123.6 77 70.1
Gohir.D09G120900 Gossypium hirsutum HOM05D004307 ORTHO05D005068 8.0e-27 123.6 77 70.1
Gorai.006G138400 Gossypium raimondii HOM05D004307 ORTHO05D005068 8.0e-27 123.6 77 70.1
Sabra06G0038900 Salix brachista HOM05D004307 ORTHO05D005068 1.0e-26 123.2 77 71.4
Os03g0174300 Oryza sativa ssp. japonica HOM05D004307 ORTHO05D005068 2.3e-26 122.1 77 70.1
HPP92_020394 Vanilla planifolia HOM05D004307 ORTHO05D005068 2.3e-26 122.1 77 71.4
SalBow6G4126 Salvia bowleyana HOM05D004307 ORTHO05D005068 5.2e-26 120.9 75 70.7
SEGI_15501 Sequoiadendron giganteum HOM05D004307 ORTHO05D005068 4.8e-24 114.4 77 68.8
Mapoly0126s0040 Marchantia polymorpha HOM05D004307 ORTHO05D005068 1.4e-23 112.8 77 66.2
AagrBONN_evm.TU.Sc2ySwM_344.2396 Anthoceros agrestis HOM05D004307 ORTHO05D005068 1.8e-23 112.5 78 69.2
Pp3c4_26380 Physcomitrium patens HOM05D004307 ORTHO05D005068 2.7e-22 108.6 77 66.2
MCO07G631 Micromonas commoda HOM05D004307 ORTHO05D005068 2.3e-10 68.9 76 42.1
Cre06.g311950 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 1.5e-09 66.2 83 45.8
Cre03.g204100 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 5.7e-09 64.3 76 47.4
Cre06.g278094 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 7.5e-09 63.9 77 40.3
Cre09.g414900 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 1.7e-08 62.8 76 46.1
Cre09.g417250 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 2.2e-08 62.4 76 44.7
Cre09.g414750 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 2.8e-08 62.0 79 43.0
Cre07.g325050 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 3.7e-08 61.6 82 43.9
Cre03.g157000 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 6.3e-08 60.8 76 42.1
Cre17.g721750 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 1.1e-07 60.1 77 41.6
Cre03.g204050 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 1.8e-07 59.3 76 42.1
Cre11.g467660 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 2.4e-07 58.9 79 39.2
Cre06.g278093 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 3.1e-07 58.5 76 40.8
CBR_g3828 Chara braunii HOM05D000019 ORTHO05D000353 7.0e-07 57.4 82 41.5
Cre09.g390750 Chlamydomonas reinhardtii HOM05D004307 ORTHO05D005068 1.6e-06 56.2 37 62.2
TAR627G0211 Trochodendron aralioides HOM05D000885 ORTHO05D008875 3.5e-06 55.1 40 65.0
CSS0007994 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 5.9e-06 54.3 30 86.7
CSS0043383 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 5.9e-06 54.3 30 86.7


User provided reference genes

Program Settings