Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 4.1e-75 284.6 144 100.0
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.4e-13 79.0 57 64.9
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 2.2e-12 76.3 57 61.4
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 2.9e-12 75.9 57 63.2
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.9e-12 75.1 57 61.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 4.9e-12 75.1 57 63.2
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 8.4e-12 74.3 57 61.4
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.4e-11 73.6 57 59.6
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.9e-11 73.2 57 57.9
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.4e-11 72.8 57 59.6
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.4e-11 72.8 57 59.6
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.4e-11 72.8 57 59.6
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.4e-11 72.8 57 59.6
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 3.2e-11 72.4 57 59.6
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 3.2e-11 72.4 57 57.9
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.2e-11 72.4 60 56.7
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 4.2e-11 72.0 57 57.9
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 4.2e-11 72.0 57 59.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.4e-11 71.6 57 57.9
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 7.1e-11 71.2 57 56.1
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 9.3e-11 70.9 60 56.7
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 9.3e-11 70.9 57 56.1
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 9.3e-11 70.9 57 56.1
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 9.3e-11 70.9 57 54.4
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.2e-10 70.5 57 56.1
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.2e-10 70.5 58 56.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.6e-10 70.1 57 57.9
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.6e-10 70.1 57 56.1
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 2.1e-10 69.7 57 56.1
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 2.7e-10 69.3 57 54.4
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.7e-10 69.3 57 57.9
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 2.7e-10 69.3 56 55.4
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.7e-10 69.3 57 54.4
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 3.5e-10 68.9 57 54.4
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 3.5e-10 68.9 57 54.4
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 4.6e-10 68.6 61 55.7
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 6.0e-10 68.2 57 54.4
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.0e-09 67.4 57 56.1
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.0e-09 67.4 57 54.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-09 67.4 57 56.1
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-09 67.4 57 56.1
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.0e-09 67.4 57 57.9
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.3e-09 67.0 57 54.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.3e-09 67.0 57 54.4
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.3e-09 67.0 57 57.9
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.8e-09 66.6 57 54.4
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.8e-09 66.6 57 54.4
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.3e-09 66.2 57 54.4
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 3.0e-09 65.9 57 54.4
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 3.0e-09 65.9 58 56.9
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 3.9e-09 65.5 57 54.4
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.9e-09 65.5 57 52.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.1e-09 65.1 57 54.4
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.1e-09 65.1 57 54.4
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 5.1e-09 65.1 57 54.4
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 5.1e-09 65.1 59 52.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 6.7e-09 64.7 60 56.7
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.7e-09 64.7 57 50.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 8.7e-09 64.3 57 52.6
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 8.7e-09 64.3 57 52.6
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 8.7e-09 64.3 57 52.6
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 8.7e-09 64.3 57 52.6
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 8.7e-09 64.3 57 50.9
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 1.1e-08 63.9 57 54.4
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.5e-08 63.5 58 53.4
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.5e-08 63.5 57 52.6
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.5e-08 63.5 57 52.6
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.5e-08 63.5 57 50.9
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.9e-08 63.2 61 50.8
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.5e-08 62.8 57 52.6
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.5e-08 62.8 57 54.4
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 3.3e-08 62.4 57 52.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 3.3e-08 62.4 57 52.6
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 3.3e-08 62.4 57 50.9
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.3e-08 62.4 57 52.6
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 4.3e-08 62.0 57 52.6
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 4.3e-08 62.0 57 52.6
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 4.3e-08 62.0 60 50.0
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 5.6e-08 61.6 57 52.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 5.6e-08 61.6 57 52.6
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 5.6e-08 61.6 57 52.6
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 5.6e-08 61.6 57 52.6
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.4e-08 61.2 57 50.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.3e-07 60.5 57 50.9
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.3e-07 60.5 55 50.9
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.3e-07 60.5 60 43.3
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 2.1e-07 59.7 51 51.0
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 2.1e-07 59.7 57 47.4
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 2.8e-07 59.3 58 50.0
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 2.8e-07 59.3 57 50.9
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 2.8e-07 59.3 57 47.4
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.7e-07 58.9 57 49.1
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 4.8e-07 58.5 57 50.9
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 6.2e-07 58.2 53 52.8
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 6.2e-07 58.2 62 48.4
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 6.2e-07 58.2 62 48.4
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.1e-06 57.4 57 50.9
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.1e-06 57.4 57 50.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.1e-06 57.4 57 49.1
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.8e-06 56.6 57 50.9
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.4e-06 56.2 60 45.0
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 3.1e-06 55.8 77 42.9
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 6.9e-06 54.7 57 49.1
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 6.9e-06 54.7 63 47.6
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 6.9e-06 54.7 57 47.4


User provided reference genes

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