Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 4.3e-59 231.1 114 100.0
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 4.1e-38 161.4 132 60.6
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 7.1e-38 160.6 132 62.1
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 1.0e-36 156.8 129 61.2
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 1.7e-36 156.0 132 59.1
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 2.3e-36 155.6 130 60.8
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 6.6e-36 154.1 132 59.1
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 8.6e-36 153.7 131 60.3
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 8.6e-36 153.7 131 60.3
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 8.6e-36 153.7 130 60.0
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 1.1e-35 153.3 126 60.3
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.1e-35 153.3 129 58.1
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 1.5e-35 152.9 127 61.4
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 1.5e-35 152.9 127 61.4
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 1.5e-35 152.9 126 59.5
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.9e-35 152.5 129 58.9
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.9e-35 152.5 129 58.9
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 1.9e-35 152.5 126 60.3
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 2.5e-35 152.1 129 58.9
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 3.3e-35 151.8 131 58.8
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 4.3e-35 151.4 132 56.8
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 5.6e-35 151.0 126 59.5
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 5.6e-35 151.0 126 61.1
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 9.5e-35 150.2 129 58.9
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 9.5e-35 150.2 125 59.2
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 9.5e-35 150.2 129 57.4
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.2e-34 149.8 129 58.1
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 1.2e-34 149.8 128 57.8
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 1.6e-34 149.4 126 58.7
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.6e-34 149.4 130 58.5
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 1.6e-34 149.4 126 59.5
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.8e-34 148.7 132 56.1
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 2.8e-34 148.7 129 58.9
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 2.8e-34 148.7 130 57.7
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 2.8e-34 148.7 129 57.4
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 3.6e-34 148.3 129 56.6
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 3.6e-34 148.3 128 59.4
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 3.6e-34 148.3 129 57.4
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 3.6e-34 148.3 128 59.4
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 6.2e-34 147.5 130 59.2
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 6.2e-34 147.5 129 57.4
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 6.2e-34 147.5 131 58.0
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 8.1e-34 147.1 129 57.4
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 1.1e-33 146.7 129 57.4
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.1e-33 146.7 133 55.6
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 1.4e-33 146.4 133 58.6
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 1.4e-33 146.4 126 57.9
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 1.8e-33 146.0 129 56.6
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 2.3e-33 145.6 133 54.9
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 2.3e-33 145.6 126 57.9
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 2.3e-33 145.6 126 57.9
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 3.1e-33 145.2 127 59.8
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 4.0e-33 144.8 126 57.1
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 4.0e-33 144.8 129 57.4
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 4.0e-33 144.8 132 56.1
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 4.0e-33 144.8 126 56.3
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 5.2e-33 144.4 126 58.7
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 5.2e-33 144.4 126 58.7
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 6.8e-33 144.1 124 58.9
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 6.8e-33 144.1 129 55.0
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 6.8e-33 144.1 126 56.3
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 6.8e-33 144.1 126 56.3
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 1.5e-32 142.9 126 57.9
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 2.0e-32 142.5 130 55.4
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 3.4e-32 141.7 131 55.7
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 4.4e-32 141.4 126 56.3
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 9.9e-32 140.2 133 56.4
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 1.7e-31 139.4 126 54.8
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 6.4e-31 137.5 134 52.2
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 6.4e-31 137.5 129 55.8
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 8.4e-31 137.1 126 56.3
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 8.4e-31 137.1 126 55.6
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 1.1e-30 136.7 126 54.0
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 1.1e-30 136.7 131 54.2
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 1.9e-30 136.0 130 54.6
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 2.4e-30 135.6 126 54.8
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 3.2e-30 135.2 131 52.7
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 3.2e-30 135.2 129 54.3
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 3.2e-30 135.2 129 54.3
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 9.2e-30 133.7 126 54.0
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 9.2e-30 133.7 127 53.5
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 1.6e-29 132.9 129 53.5
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 2.7e-29 132.1 126 53.2
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 3.5e-29 131.7 129 53.5
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 4.6e-29 131.3 126 51.6
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 4.6e-29 131.3 126 52.4
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 1.0e-28 130.2 128 52.3
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 1.0e-28 130.2 130 50.8
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 1.7e-28 129.4 130 54.6
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.7e-28 129.4 126 52.4
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 2.3e-28 129.0 131 51.1
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 2.3e-28 129.0 126 50.0
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 2.3e-28 129.0 177 41.2
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 3.0e-28 128.6 132 51.5
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 3.0e-28 128.6 129 49.6
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 3.9e-28 128.3 130 50.0
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 5.1e-28 127.9 130 50.0
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 6.6e-28 127.5 126 53.2
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 6.6e-28 127.5 126 53.2
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 8.6e-28 127.1 130 49.2
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 1.5e-27 126.3 130 50.0
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 1.5e-27 126.3 126 52.4
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 1.5e-27 126.3 129 49.6
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 1.9e-27 125.9 131 48.9
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 2.5e-27 125.6 126 51.6
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 2.5e-27 125.6 133 48.1
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 4.3e-27 124.8 127 50.4
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 5.6e-27 124.4 126 52.4
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 7.3e-27 124.0 125 49.6
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 7.3e-27 124.0 127 49.6
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 7.3e-27 124.0 126 50.0
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 9.6e-27 123.6 133 48.1
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 2.1e-26 122.5 126 50.0
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 3.6e-26 121.7 130 51.5
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 4.7e-26 121.3 124 51.6
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 4.7e-26 121.3 125 50.4
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 6.2e-26 120.9 134 48.5
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 6.2e-26 120.9 127 48.8
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 1.4e-25 119.8 174 39.1
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.8e-25 119.4 135 46.7
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 4.0e-25 118.2 140 43.6
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 4.0e-25 118.2 126 46.8
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 5.2e-25 117.9 142 45.1
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 5.2e-25 117.9 130 48.5
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 3.4e-24 115.2 136 45.6
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 4.9e-23 111.3 102 53.9
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 6.4e-23 110.9 126 46.0
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 1.1e-22 110.2 161 39.1
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 1.9e-22 109.4 115 49.6
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 2.1e-21 105.9 102 53.9
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 3.5e-21 105.1 104 52.9
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 4.6e-21 104.8 99 52.5
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 1.3e-20 103.2 103 54.4
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 3.0e-20 102.1 110 47.3
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 5.1e-20 101.3 125 45.6
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 8.7e-20 100.5 134 40.3
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 1.1e-19 100.1 100 55.0
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 1.5e-19 99.8 99 50.5
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 1.5e-19 99.8 132 41.7
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 1.9e-19 99.4 100 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 2.5e-19 99.0 131 41.2
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 2.5e-19 99.0 99 49.5
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 3.3e-19 98.6 132 43.2
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 4.3e-19 98.2 102 51.0
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 2.8e-18 95.5 137 38.0
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 1.5e-16 89.7 127 40.9
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 4.5e-16 88.2 131 38.2
Sabra05G0120500 Salix brachista HOM05D004160 ORTHO05D004757 1.9e-14 82.8 59 62.7
CDE06G2402 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.2e-13 80.1 54 66.7
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 1.6e-13 79.7 98 48.0
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 2.1e-13 79.3 131 37.4
Pp3c8_11730 Physcomitrium patens HOM05D004160 ORTHO05D004757 2.1e-13 79.3 130 36.2
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 3.5e-13 78.6 53 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1569 Anthoceros agrestis HOM05D004160 ORTHO05D004757 2.3e-12 75.9 129 34.1
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 3.9e-12 75.1 53 62.3
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 1.9e-11 72.8 53 60.4
FvH4_5g35650 Fragaria vesca HOM05D004160 ORTHO05D004757 4.3e-11 71.6 56 58.9
Dinv44844 Davidia involucrata HOM05D004160 ORTHO05D004757 2.1e-10 69.3 56 57.1
Manes.18G060500 Manihot esculenta HOM05D004160 ORTHO05D004757 3.6e-10 68.6 51 62.7
MBI02_g09036_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 1.4e-09 66.6 59 52.5
ATR0022G063 Amborella trichopoda HOM05D004160 ORTHO05D004757 2.6e-08 62.4 61 50.8
MELO3C011103.2 Cucumis melo HOM05D004160 ORTHO05D004757 2.6e-08 62.4 54 55.6
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 3.4e-08 62.0 99 38.4
Zm00001eb257060 Zea mays HOM05D004160 ORTHO05D004757 2.4e-06 55.8 58 48.3
Glyma.12G143501 Glycine max HOM05D000739 ORTHO05D004757 9.3e-06 53.9 33 72.7
SEGI_02584 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 9.3e-06 53.9 129 26.4


User provided reference genes

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