Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 0.0e+00 1676.8 1074 100.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 6.4e-264 914.8 821 61.6
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.5e-260 903.7 813 61.1
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.6e-259 899.0 813 60.5
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 3.6e-259 899.0 813 60.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 9.9e-257 891.0 825 58.4
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 3.8e-256 889.0 823 59.7
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.1e-255 887.5 823 59.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 5.4e-255 885.2 821 58.8
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.0e-253 880.9 813 59.2
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 5.1e-253 878.6 813 58.9
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.5e-252 877.1 813 58.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 5.6e-252 875.2 822 57.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 7.3e-252 874.8 831 57.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 9.6e-252 874.4 825 58.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 9.6e-252 874.4 817 58.8
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.2e-251 874.0 822 58.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 2.8e-251 872.8 811 59.1
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.6e-251 872.5 822 58.0
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 6.2e-251 871.7 822 59.0
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.1e-250 870.9 817 58.0
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.4e-250 870.5 817 58.3
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.4e-250 869.8 815 59.4
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 9.0e-250 867.8 817 58.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.6e-249 866.3 813 58.7
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.4e-249 865.9 822 57.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 7.6e-249 864.8 816 58.3
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.3e-248 864.0 827 57.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 7.1e-247 858.2 821 57.5
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.2e-246 857.4 817 58.5
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 3.5e-246 855.9 822 56.6
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.6e-246 855.5 817 58.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 7.8e-246 854.7 818 58.2
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 3.9e-245 852.4 811 57.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.5e-244 849.7 819 57.8
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.3e-243 847.4 821 57.4
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 6.2e-243 845.1 817 56.4
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 8.1e-243 844.7 813 57.2
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.1e-242 844.3 823 57.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-242 844.3 809 57.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.1e-242 844.3 817 57.0
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 3.1e-242 842.8 815 57.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 5.3e-242 842.0 815 56.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 9.0e-242 841.3 816 56.5
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.2e-241 840.9 824 56.7
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-241 840.9 811 56.8
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.0e-241 840.1 813 56.7
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 2.0e-241 840.1 824 55.8
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.9e-240 836.3 828 56.5
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.9e-240 835.5 817 56.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.9e-240 835.5 845 55.9
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 6.4e-240 835.1 815 56.9
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.2e-239 832.4 821 56.5
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 5.4e-239 832.0 816 56.6
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 7.1e-239 831.6 817 56.3
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.6e-238 830.5 846 55.4
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 1.8e-237 827.0 813 56.3
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 3.0e-237 826.2 817 56.5
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.5e-236 823.9 821 54.9
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.9e-236 823.5 816 55.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.3e-236 822.8 814 55.9
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 5.6e-236 822.0 816 55.1
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 9.6e-236 821.2 816 55.3
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 9.6e-236 821.2 851 54.4
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.8e-235 819.7 818 55.3
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.8e-235 819.7 814 56.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-234 817.8 816 55.0
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.1e-234 817.8 816 55.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.5e-233 813.9 838 53.8
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 4.5e-233 812.4 811 54.3
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 5.8e-233 812.0 816 54.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.7e-232 810.4 781 57.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.9e-232 809.7 812 55.0
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 2.4e-231 806.6 816 53.6
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 2.4e-231 806.6 816 53.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 3.2e-231 806.2 816 53.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 9.3e-231 804.7 841 53.4
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 9.3e-231 804.7 828 54.6
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 4.6e-230 802.4 816 53.3
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 4.6e-230 802.4 816 53.3
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.6e-230 802.4 816 53.6
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 3.3e-228 796.2 819 53.8
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 4.3e-228 795.8 828 54.2
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 9.6e-228 794.7 821 52.9
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.8e-227 793.1 824 54.4
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.1e-226 791.2 816 52.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.8e-226 790.4 821 52.6
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 6.9e-226 788.5 820 54.3
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.8e-224 782.7 814 54.4
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.8e-218 763.8 820 51.1
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.5e-217 760.8 769 54.9
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.6e-217 760.0 811 53.5
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 5.9e-217 758.8 813 51.8
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.0e-216 758.1 817 53.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 5.5e-215 752.3 823 50.8
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.2e-214 751.1 749 55.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.1e-210 734.9 837 51.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.9e-207 727.2 705 57.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.2e-206 724.5 827 50.3
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 6.7e-205 718.8 818 49.4
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.6e-204 716.8 723 54.2
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 6.3e-203 712.2 815 49.2
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 6.9e-202 708.8 825 47.8
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.3e-200 704.5 795 49.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.8e-200 703.0 815 49.2
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 5.5e-199 699.1 816 49.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 5.5e-199 699.1 816 49.3
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.7e-198 696.8 813 48.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-191 674.9 794 48.5
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 5.0e-184 649.4 820 45.7
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.7e-182 643.7 711 52.9
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 8.6e-176 622.1 592 57.6
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.1e-174 617.5 784 46.6
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.0e-169 600.9 823 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.9e-168 597.0 824 41.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 6.1e-166 589.3 815 42.6
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.2e-165 586.3 599 53.3
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.2e-164 585.1 817 42.4
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.6e-164 583.9 599 52.4
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.0e-160 570.5 592 53.2
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.1e-157 562.0 602 53.5
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.3e-151 540.4 804 39.6
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 8.7e-128 462.6 454 57.5
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 2.4e-125 454.5 819 38.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 3.9e-112 410.6 684 38.3
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.4e-106 392.1 460 48.3
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 4.6e-105 387.1 346 60.7
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.7e-86 324.3 799 30.8
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.3e-83 315.8 537 39.1
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.7e-73 280.8 225 63.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.0e-68 265.4 816 25.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.4e-61 241.9 222 60.8
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.4e-53 215.3 903 24.9
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.0e-43 183.3 561 29.6
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.8e-40 170.6 221 47.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 6.8e-32 144.1 193 44.6
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.2e-31 143.3 102 66.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 9.9e-31 140.2 118 57.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.3e-30 139.8 128 59.4
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 2.5e-26 125.6 113 58.4
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 3.1e-24 118.6 222 36.0
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.9e-23 113.6 88 63.6
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 6.4e-22 110.9 216 36.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.7e-20 105.5 76 68.4
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 3.0e-19 102.1 81 67.9
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.9e-18 99.4 76 63.2
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 2.1e-17 95.9 235 36.6
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 5.8e-15 87.8 93 49.5
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 2.4e-13 82.4 115 42.6
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.7e-12 79.0 98 40.8
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.6e-12 78.2 97 48.5
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.3e-10 72.0 93 38.7
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-09 70.1 74 51.4
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-09 70.1 74 51.4
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 3.6e-09 68.6 56 66.1
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 8.1e-09 67.4 74 50.0
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 3.1e-08 65.5 76 48.7
SHI49384 Sapria himalayana HOM05D015164 ORTHO05D005404 3.4e-07 62.0 74 50.0
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 5.8e-07 61.2 63 52.4
SHI02500 Sapria himalayana HOM05D015164 ORTHO05D005404 1.3e-06 60.1 48 64.6
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 8.4e-06 57.4 64 45.3


User provided reference genes

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