Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 8.0e-126 453.8 225 100.0
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.8e-51 205.7 189 58.2
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 3.2e-50 202.6 190 57.4
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.0e-48 197.6 191 57.6
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 8.7e-48 194.5 191 56.5
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.5e-47 193.7 195 54.4
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.5e-47 193.7 188 58.5
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.9e-47 193.4 192 57.8
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 4.3e-47 192.2 192 57.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 7.4e-47 191.4 189 58.2
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.1e-45 187.6 191 53.9
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.4e-45 187.2 189 54.5
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.8e-45 186.8 189 56.1
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 5.3e-45 185.3 190 54.2
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 5.3e-45 185.3 194 51.5
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.9e-45 184.9 194 52.1
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 6.9e-45 184.9 189 54.0
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 9.0e-45 184.5 189 54.5
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 9.0e-45 184.5 189 54.5
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.2e-44 184.1 188 55.3
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.5e-44 183.7 188 56.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.0e-44 183.3 188 54.3
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.4e-44 182.6 181 56.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.5e-44 182.2 193 51.8
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 5.8e-44 181.8 195 52.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 5.8e-44 181.8 182 54.4
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 7.6e-44 181.4 184 54.3
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.0e-43 181.0 189 55.6
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.3e-43 180.6 193 51.3
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.3e-43 180.6 191 53.9
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.7e-43 180.3 192 51.6
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 2.2e-43 179.9 183 53.0
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.2e-43 179.9 182 57.1
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 3.8e-43 179.1 188 52.7
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.9e-43 178.7 184 56.0
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 4.9e-43 178.7 192 52.6
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 4.9e-43 178.7 192 52.1
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.5e-43 178.3 195 51.3
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 6.5e-43 178.3 187 51.9
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 6.5e-43 178.3 188 53.7
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 6.5e-43 178.3 194 52.1
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 6.5e-43 178.3 194 52.6
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 6.5e-43 178.3 194 52.6
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 6.5e-43 178.3 194 52.1
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 8.4e-43 177.9 183 55.2
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 8.4e-43 177.9 184 55.4
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 8.4e-43 177.9 193 53.4
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-42 177.2 181 55.2
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.9e-42 176.8 193 50.3
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.9e-42 176.8 187 51.9
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 2.5e-42 176.4 155 61.9
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 3.2e-42 176.0 191 53.4
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 5.5e-42 175.3 191 50.3
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 5.5e-42 175.3 194 51.5
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 5.5e-42 175.3 184 54.3
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 9.3e-42 174.5 193 51.8
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 9.3e-42 174.5 193 51.8
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 9.3e-42 174.5 187 51.9
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 9.3e-42 174.5 192 55.2
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.6e-41 173.7 174 52.9
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.6e-41 173.7 186 53.2
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.6e-41 173.7 149 63.8
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.6e-41 173.7 195 52.3
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 2.1e-41 173.3 189 50.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.1e-41 173.3 189 51.9
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.7e-41 172.9 194 50.5
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.5e-41 172.6 162 53.7
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 4.6e-41 172.2 199 49.2
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 4.6e-41 172.2 189 50.8
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 6.0e-41 171.8 190 52.6
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 7.9e-41 171.4 195 49.2
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.0e-40 171.0 188 53.7
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.0e-40 171.0 161 60.9
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-40 170.6 189 50.3
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 5.1e-40 168.7 190 52.6
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 8.7e-40 167.9 226 45.6
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.1e-39 167.5 164 54.9
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.1e-39 167.5 192 51.6
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.5e-39 167.2 194 51.0
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.9e-39 166.8 193 50.8
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.9e-39 166.8 193 50.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 5.7e-39 165.2 188 52.7
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.4e-39 164.9 165 53.3
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.6e-39 164.5 221 46.2
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 2.1e-38 163.3 164 56.7
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 2.1e-38 163.3 164 53.7
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.8e-38 162.9 164 56.1
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 3.7e-38 162.5 154 59.7
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 4.8e-38 162.2 161 50.3
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 6.3e-38 161.8 177 51.4
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 6.3e-38 161.8 178 53.4
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-37 160.6 165 52.1
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.8e-37 160.2 165 52.1
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.8e-37 160.2 165 52.1
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.4e-37 159.8 219 45.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 3.1e-37 159.5 165 52.1
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 4.1e-37 159.1 151 54.3
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 4.1e-37 159.1 176 52.8
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 4.1e-37 159.1 186 50.5
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.3e-37 158.7 165 52.1
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 6.9e-37 158.3 188 47.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-36 156.8 245 42.0
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.9e-36 155.2 151 53.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.0e-35 154.5 191 46.6
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.3e-35 154.1 183 48.1
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 1.7e-35 153.7 164 53.7
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 5.0e-35 152.1 155 53.5
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 8.4e-35 151.4 191 46.1
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.5e-34 149.8 195 46.7
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 6.1e-33 145.2 119 59.7
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.3e-32 144.1 202 40.6
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.8e-32 143.7 228 42.1
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.3e-32 143.3 149 50.3
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 3.0e-32 142.9 99 66.7
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.5e-31 140.6 161 52.2
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 7.4e-31 138.3 303 33.7
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 3.1e-29 132.9 179 45.3
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 7.2e-26 121.7 160 40.6
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 9.4e-26 121.3 167 44.9
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.0e-24 117.9 145 47.6
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.7e-24 115.2 131 48.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.1e-23 114.4 69 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.0e-23 113.6 168 41.1
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 3.3e-23 112.8 188 37.8
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.3e-23 112.5 69 68.1
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 5.7e-23 112.1 173 42.2
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 8.2e-22 108.2 185 36.2
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.1e-21 107.8 78 66.7
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.8e-21 107.1 73 67.1
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.4e-21 106.7 73 64.4
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 3.1e-21 106.3 81 67.9
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.1e-21 105.9 72 65.3
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.3e-21 105.5 67 73.1
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 9.1e-21 104.8 73 64.4
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 1.5e-20 104.0 77 59.7
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.9e-19 99.8 143 42.0
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.5e-15 87.4 76 51.3
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 7.4e-15 85.1 121 48.8
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.2e-14 83.6 74 58.1
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 6.3e-14 82.0 73 49.3
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.4e-13 80.9 74 55.4
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 7.0e-13 78.6 190 33.2
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.0e-11 74.7 121 43.8
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 3.6e-09 66.2 57 57.9
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 8.8e-08 61.6 84 33.3
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.7e-07 58.9 58 50.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.5e-07 58.5 92 45.7
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.3e-06 57.8 115 37.4
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.7e-06 57.4 119 35.3


User provided reference genes

Program Settings