Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28311 Sapria himalayana HOM05D006703 ORTHO05D008389 2.0e-272 941.8 475 100.0
Potri.016G066800 Populus trichocarpa HOM05D006703 ORTHO05D008389 1.7e-21 108.2 126 50.0
Sabra16G0068200 Salix brachista HOM05D006703 ORTHO05D008389 5.6e-20 103.2 126 47.6
Manes.08G036200 Manihot esculenta HOM05D006703 ORTHO05D008389 9.8e-17 92.4 126 45.2
Atru.chr8.1299 Acer truncatum HOM05D006703 ORTHO05D008389 2.9e-16 90.9 99 52.5
TWI77G0507 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 8.3e-16 89.4 153 43.1
MSTRG.19329 Avicennia marina HOM05D006703 ORTHO05D008389 1.1e-15 89.0 162 39.5
A03p19820 Brassica napus HOM05D006703 ORTHO05D008389 1.4e-15 88.6 88 50.0
BraA03t11234Z Brassica rapa HOM05D006703 ORTHO05D008389 1.4e-15 88.6 88 50.0
Ca_09072_v3 Cicer arietinum L. HOM05D006703 ORTHO05D008389 2.4e-15 87.8 193 33.2
C03p23140 Brassica napus HOM05D006703 ORTHO05D008389 3.2e-15 87.4 83 51.8
MELO3C009564.2 Cucumis melo HOM05D006703 ORTHO05D008389 3.2e-15 87.4 127 46.5
Duzib093G0046 Durio zibethinus HOM05D006703 ORTHO05D008389 3.2e-15 87.4 111 48.6
Gohir.A01G200000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 3.2e-15 87.4 127 43.3
Gorai.002G233800 Gossypium raimondii HOM05D006703 ORTHO05D008389 4.1e-15 87.0 127 43.3
Gohir.D01G190000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 5.4e-15 86.7 127 43.3
RcHm_v2.0_Chr3g0477171 Rosa chinensis HOM05D006703 ORTHO05D008389 9.2e-15 85.9 128 45.3
FvH4_6g20830 Fragaria vesca HOM05D006703 ORTHO05D008389 1.6e-14 85.1 200 38.0
FAN14G3264 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.6e-14 85.1 179 39.7
Manes.09G042800 Manihot esculenta HOM05D006703 ORTHO05D008389 2.1e-14 84.7 129 45.7
RcHm_v2.0_Chr3g0477081 Rosa chinensis HOM05D006703 ORTHO05D008389 2.7e-14 84.3 130 44.6
CARHR130150 Cardamine hirsuta HOM05D006703 ORTHO05D008389 3.5e-14 84.0 163 39.9
FAN09G4763 Fragaria x ananassa HOM05D006703 ORTHO05D008389 3.5e-14 84.0 131 45.8
Sed0010784 Sechium edule HOM05D006703 ORTHO05D008389 3.5e-14 84.0 127 42.5
HanXRQChr02g0052921 Helianthus annuus HOM05D006703 ORTHO05D008389 4.6e-14 83.6 177 36.2
Hma1.2p1_0401F.1_g144790 Hydrangea macrophylla HOM05D006703 ORTHO05D008389 7.8e-14 82.8 130 43.8
Aqoxy1G00585 Aquilegia oxysepala HOM05D006703 ORTHO05D008389 1.0e-13 82.4 146 37.7
AL4G32000 Arabidopsis lyrata HOM05D006703 ORTHO05D008389 1.0e-13 82.4 125 43.2
COL.COLO4_29515 Corchorus olitorius HOM05D006703 ORTHO05D008389 1.0e-13 82.4 124 40.3
FAN05G3633 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.0e-13 82.4 131 45.0
Lj1A1058G53 Lonicera japonica HOM05D006703 ORTHO05D008389 1.0e-13 82.4 126 44.4
BcaC01g05692 Brassica carinata HOM05D006703 ORTHO05D008389 1.3e-13 82.0 83 50.6
BolC3t14715H Brassica oleracea HOM05D006703 ORTHO05D008389 1.3e-13 82.0 83 50.6
FAN05G2374 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.3e-13 82.0 131 45.0
Phvul.001G197500 Phaseolus vulgaris HOM05D006703 ORTHO05D008389 1.3e-13 82.0 95 48.4
Thecc.05G108700 Theobroma cacao HOM05D006703 ORTHO05D008389 1.3e-13 82.0 124 41.1
GSVIVG01022605001 Vitis vinifera HOM05D006703 ORTHO05D008389 1.3e-13 82.0 155 41.3
AT2G35900 Arabidopsis thaliana HOM05D006703 ORTHO05D008389 1.7e-13 81.6 125 41.6
Duzib106G1644 Durio zibethinus HOM05D006703 ORTHO05D008389 1.7e-13 81.6 125 41.6
BcaB06g28891 Brassica carinata HOM05D006703 ORTHO05D008389 2.3e-13 81.3 127 40.9
Lj1g0009334 Lotus japonicus HOM05D006703 ORTHO05D008389 2.3e-13 81.3 130 43.1
Nitab4.5_0000721g0180 Nicotiana tabacum HOM05D006703 ORTHO05D008389 3.0e-13 80.9 126 42.9
ClCG10G018080 Citrullus lanatus HOM05D006703 ORTHO05D008389 5.1e-13 80.1 130 43.1
Rhsim03G0062400 Rhododendron simsii HOM05D006703 ORTHO05D008389 5.1e-13 80.1 198 31.3
Nitab4.5_0001918g0020 Nicotiana tabacum HOM05D006703 ORTHO05D008389 6.6e-13 79.7 129 41.9
FAN02G3199 Fragaria x ananassa HOM05D006703 ORTHO05D008389 8.6e-13 79.3 131 44.3
Oeu020165.3 Olea europaea HOM05D006703 ORTHO05D008389 8.6e-13 79.3 127 38.6
Psat3g028120 Pisum sativum HOM05D006703 ORTHO05D008389 8.6e-13 79.3 107 45.8
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 8.6e-13 79.3 93 50.5
DCAR_013453 Daucus carota HOM05D006703 ORTHO05D008389 1.1e-12 79.0 165 35.8
vmacro07494 Vaccinium macrocarpon HOM05D006703 ORTHO05D008389 1.1e-12 79.0 139 36.7
CsaV3_3G038210 Cucumis sativus L. HOM05D006703 ORTHO05D008389 1.5e-12 78.6 131 43.5
ECA233G5710 Erigeron canadensis HOM05D006703 ORTHO05D008389 1.5e-12 78.6 78 51.3
ATR0697G151 Amborella trichopoda HOM05D006703 ORTHO05D008389 1.9e-12 78.2 78 55.1
MSTRG.26583 Avicennia marina HOM05D006703 ORTHO05D008389 1.9e-12 78.2 122 42.6
Thhalv10017281m.g Eutrema salsugineum HOM05D006703 ORTHO05D008389 1.9e-12 78.2 124 41.9
Carub.0004s1765 Capsella rubella HOM05D006703 ORTHO05D008389 2.5e-12 77.8 123 39.0
CiPaw.10G019700 Carya illinoinensis HOM05D006703 ORTHO05D008389 2.5e-12 77.8 131 41.2
Prupe.7G090900 Prunus persica HOM05D006703 ORTHO05D008389 2.5e-12 77.8 133 42.9
Sed0006927 Sechium edule HOM05D006703 ORTHO05D008389 2.5e-12 77.8 191 34.0
SGA_v2.0_scaffold31G12818 Striga asiatica HOM05D006703 ORTHO05D008389 2.5e-12 77.8 74 55.4
Actinidia37767 Actinidia chinensis HOM05D006703 ORTHO05D008389 3.3e-12 77.4 128 43.8
BolC4t27966H Brassica oleracea HOM05D006703 ORTHO05D008389 3.3e-12 77.4 79 50.6
BraA04t18236Z Brassica rapa HOM05D006703 ORTHO05D008389 3.3e-12 77.4 79 50.6
CiPaw.09G023100 Carya illinoinensis HOM05D006703 ORTHO05D008389 3.3e-12 77.4 170 36.5
Eucgr.K01914 Eucalyptus grandis HOM05D006703 ORTHO05D008389 3.3e-12 77.4 130 43.1
Nn2g14390 Nelumbo nucifera HOM05D006703 ORTHO05D008389 3.3e-12 77.4 124 39.5
Sp4g18150 Schrenkiella parvula HOM05D006703 ORTHO05D008389 3.3e-12 77.4 125 41.6
MD14G1043200 Malus domestica HOM05D006703 ORTHO05D008389 4.3e-12 77.0 129 42.6
Hund14986 Selenicereus undatus HOM05D006703 ORTHO05D008389 4.3e-12 77.0 161 36.6
Sc22g0003150 Simmondsia chinensis HOM05D006703 ORTHO05D008389 5.6e-12 76.6 154 36.4
Aa31LG5G21040 Aethionema arabicum HOM05D006703 ORTHO05D008389 7.3e-12 76.3 129 39.5
BcaC02g07656 Brassica carinata HOM05D006703 ORTHO05D008389 7.3e-12 76.3 79 49.4
C04p64910 Brassica napus HOM05D006703 ORTHO05D008389 7.3e-12 76.3 79 49.4
Solyc10g081750.1 Solanum lycopersicum HOM05D006703 ORTHO05D008389 7.3e-12 76.3 109 40.4
Cfa020082 Carpinus fangiana HOM05D006703 ORTHO05D008389 9.5e-12 75.9 174 35.6
CDE10G0766 Ceratophyllum demersum HOM05D006703 ORTHO05D008389 9.5e-12 75.9 88 45.5
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 9.5e-12 75.9 102 48.0
HanXRQChr13g0398671 Helianthus annuus HOM05D006703 ORTHO05D008389 1.2e-11 75.5 116 39.7
PGSC0003DMG400028230 Solanum tuberosum HOM05D006703 ORTHO05D008389 1.2e-11 75.5 109 42.2
Peaxi162Scf00203g00910 Petunia axillaris HOM05D006703 ORTHO05D008389 1.6e-11 75.1 167 35.3
PGR004G0398 Punica granatum HOM05D006703 ORTHO05D008389 1.6e-11 75.1 126 39.7
QL07p026854 Quercus lobata HOM05D006703 ORTHO05D008389 2.1e-11 74.7 96 50.0
A04p27380 Brassica napus HOM05D006703 ORTHO05D008389 2.8e-11 74.3 77 50.6
Sopen10g032260 Solanum pennellii HOM05D006703 ORTHO05D008389 2.8e-11 74.3 109 42.2
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 2.8e-11 74.3 122 36.9
Medtr7g106660 Medicago truncatula HOM05D006703 ORTHO05D008389 3.6e-11 73.9 112 41.1
Hund10833 Selenicereus undatus HOM05D006703 ORTHO05D008389 3.6e-11 73.9 108 40.7
arahy.Tifrunner.gnm1.ann1.8DDT0E Arachis hypogaea HOM05D006703 ORTHO05D008389 4.7e-11 73.6 112 44.6
EL10Ac5g11822 Beta vulgaris HOM05D006703 ORTHO05D008389 4.7e-11 73.6 164 34.8
AUR62030691 Chenopodium quinoa HOM05D006703 ORTHO05D008389 4.7e-11 73.6 167 32.9
PSO017G1234 Papaver somniferum HOM05D006703 ORTHO05D008389 6.2e-11 73.2 131 38.9
MBI05_g29094_MAGBIO Magnolia biondii HOM05D006703 ORTHO05D008389 1.1e-10 72.4 79 48.1
TPR.G34442 Trifolium pratense HOM05D006703 ORTHO05D008389 1.1e-10 72.4 127 39.4
arahy.Tifrunner.gnm1.ann1.W58RTV Arachis hypogaea HOM05D006703 ORTHO05D008389 2.3e-10 71.2 112 42.9
EL10Ac9g21006 Beta vulgaris HOM05D006703 ORTHO05D008389 2.3e-10 71.2 138 37.0
AUR62036335 Chenopodium quinoa HOM05D006703 ORTHO05D008389 2.3e-10 71.2 97 41.2
Migut.J00741 Erythranthe guttata HOM05D006703 ORTHO05D008389 2.3e-10 71.2 174 35.6
THA.LOC104823512 Tarenaya hassleriana HOM05D006703 ORTHO05D008389 2.3e-10 71.2 127 38.6
Haze_20110 Corylus avellana HOM05D006703 ORTHO05D008389 3.1e-10 70.9 130 43.1
TWI74G0187 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 6.8e-10 69.7 127 40.9
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 1.2e-09 68.9 122 37.7
Lalb_Chr01g0017771 Lupinus albus HOM05D006703 ORTHO05D008389 1.5e-09 68.6 94 45.7
CDE10G0313 Ceratophyllum demersum HOM05D006703 ORTHO05D001378 3.4e-09 67.4 113 39.8
Cc06_g06870 Coffea canephora HOM05D006703 ORTHO05D008389 4.4e-09 67.0 150 34.0
Glyma.03G204000 Glycine max HOM05D006703 ORTHO05D008389 9.9e-09 65.9 82 43.9
SHI39227 Sapria himalayana HOM05D000030 ORTHO05D000009 2.9e-08 64.3 32 93.8
SGA_v2.0_scaffold392G50677 Striga asiatica HOM05D006703 ORTHO05D008389 4.9e-08 63.5 124 37.9
MD12G1044300 Malus domestica HOM05D006703 ORTHO05D008389 6.4e-08 63.2 130 36.9
Actinidia03970 Actinidia chinensis HOM05D006703 ORTHO05D008389 8.3e-08 62.8 84 47.6
SHI02635 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-07 62.0 32 87.5
Zm00001eb151930 Zea mays HOM05D006703 ORTHO05D008389 2.4e-07 61.2 131 35.9
Os01g0771200 Oryza sativa ssp. japonica HOM05D006703 ORTHO05D008389 3.2e-07 60.8 116 37.1
Actinidia03862 Actinidia chinensis HOM05D006703 ORTHO05D008389 4.1e-07 60.5 127 40.2
CANSAT64G1940 Cannabis sativa HOM05D006703 ORTHO05D008389 4.1e-07 60.5 72 48.6
SHI09002 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-07 60.5 30 93.3
unitig_749.g14212 Utricularia gibba HOM05D006703 ORTHO05D008389 5.4e-07 60.1 77 42.9


User provided reference genes

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