Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28305 Sapria himalayana HOM05D001890 ORTHO05D003442 1.0e-62 243.0 109 100.0
arahy.Tifrunner.gnm1.ann1.JU9MFG Arachis hypogaea HOM05D001890 ORTHO05D003442 2.5e-16 89.0 52 71.2
FAN09G2041 Fragaria x ananassa HOM05D001890 ORTHO05D003442 4.4e-13 78.2 57 59.6
TPR.G7023 Trifolium pratense HOM05D001890 ORTHO05D003442 7.5e-13 77.4 51 60.8
Aqoxy1G00604 Aquilegia oxysepala HOM05D001890 ORTHO05D003442 2.2e-12 75.9 37 83.8
Peaxi162Scf00675g00056 Petunia axillaris HOM05D001890 ORTHO05D003442 2.2e-12 75.9 42 73.8
CAN.G911.29 Capsicum annuum HOM05D001890 ORTHO05D003442 3.7e-12 75.1 70 55.7
Cfa020085 Carpinus fangiana HOM05D001890 ORTHO05D003442 3.7e-12 75.1 37 83.8
Lj1g0026398 Lotus japonicus HOM05D001890 ORTHO05D003442 3.7e-12 75.1 37 78.4
Lalb_Chr20g0111261 Lupinus albus HOM05D001890 ORTHO05D003442 1.1e-11 73.6 45 68.9
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 1.1e-11 73.6 37 81.1
COL.COLO4_29518 Corchorus olitorius HOM05D001890 ORTHO05D003442 1.4e-11 73.2 37 81.1
Psat3g028200 Pisum sativum HOM05D001890 ORTHO05D003442 1.4e-11 73.2 37 81.1
Duzib093G1618 Durio zibethinus HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Gohir.A09G132700 Gossypium hirsutum HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Gohir.D01G122600 Gossypium hirsutum HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Gohir.D09G129000 Gossypium hirsutum HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Gorai.002G153500 Gossypium raimondii HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Gorai.006G147700 Gossypium raimondii HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Thecc.05G108400 Theobroma cacao HOM05D001890 ORTHO05D003442 1.9e-11 72.8 37 81.1
Ca_11670_v3 Cicer arietinum L. HOM05D001890 ORTHO05D003442 2.4e-11 72.4 37 78.4
Gohir.A01G135400 Gossypium hirsutum HOM05D001890 ORTHO05D003442 2.4e-11 72.4 36 83.3
arahy.Tifrunner.gnm1.ann1.AQHB6D Arachis hypogaea HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 75.7
arahy.Tifrunner.gnm1.ann1.M3JRXW Arachis hypogaea HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 75.7
CiPaw.09G022800 Carya illinoinensis HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 81.1
Cc01_g02980 Coffea canephora HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Cc01_g03030 Coffea canephora HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Cc06_g06840 Coffea canephora HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Glyma.03G203900 Glycine max HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Glyma.19G201300 Glycine max HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Lalb_Chr01g0017781 Lupinus albus HOM05D001890 ORTHO05D003442 3.2e-11 72.0 36 80.6
Oeu020167.1 Olea europaea HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Phvul.001G197400 Phaseolus vulgaris HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
QL07p026881 Quercus lobata HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 75.7
SalBow5G5266 Salvia bowleyana HOM05D001890 ORTHO05D003442 3.2e-11 72.0 37 78.4
Dinv11882 Davidia involucrata HOM05D001890 ORTHO05D003442 4.1e-11 71.6 37 75.7
Medtr7g106640 Medicago truncatula HOM05D001890 ORTHO05D003442 4.1e-11 71.6 37 75.7
Psat1g223360 Pisum sativum HOM05D001890 ORTHO05D003442 4.1e-11 71.6 37 75.7
Duzib128G1367 Durio zibethinus HOM05D001890 ORTHO05D003442 5.4e-11 71.2 37 78.4
Eucgr.A02559 Eucalyptus grandis HOM05D001890 ORTHO05D003442 5.4e-11 71.2 36 77.8
Medtr1g055315 Medicago truncatula HOM05D001890 ORTHO05D003442 5.4e-11 71.2 37 75.7
SEGI_19574 Sequoiadendron giganteum HOM05D001890 ORTHO05D003442 5.4e-11 71.2 36 77.8
Cpa.g.sc104.3 Carica papaya HOM05D001890 ORTHO05D003442 7.0e-11 70.9 37 75.7
CiPaw.10G019600 Carya illinoinensis HOM05D001890 ORTHO05D003442 7.0e-11 70.9 37 75.7
Solyc01g006870.4 Solanum lycopersicum HOM05D001890 ORTHO05D003442 7.0e-11 70.9 37 78.4
Sopen01g002860 Solanum pennellii HOM05D001890 ORTHO05D003442 7.0e-11 70.9 37 78.4
SGA_v2.0_scaffold31G12814 Striga asiatica HOM05D001890 ORTHO05D003442 7.0e-11 70.9 44 65.9
TAR623G0995 Trochodendron aralioides HOM05D001890 ORTHO05D003442 7.0e-11 70.9 37 78.4
CSS0016780 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D003442 9.2e-11 70.5 37 75.7
Migut.J00744 Erythranthe guttata HOM05D001890 ORTHO05D003442 9.2e-11 70.5 39 71.8
Hma1.2p1_0969F.1_g242598 Hydrangea macrophylla HOM05D001890 ORTHO05D003442 9.2e-11 70.5 37 73.0
Hma1.2p1_2851F.1_g329440 Hydrangea macrophylla HOM05D001890 ORTHO05D003442 9.2e-11 70.5 37 73.0
TPR.G25807 Trifolium pratense HOM05D001890 ORTHO05D003442 9.2e-11 70.5 37 70.3
Glyma.02G193200 Glycine max HOM05D001890 ORTHO05D003442 1.2e-10 70.1 37 73.0
arahy.Tifrunner.gnm1.ann1.3V0CBS Arachis hypogaea HOM05D001890 ORTHO05D003442 1.6e-10 69.7 37 75.7
Lj1A1058T56 Lonicera japonica HOM05D001890 ORTHO05D003442 1.6e-10 69.7 37 73.0
Nitab4.5_0005218g0020 Nicotiana tabacum HOM05D001890 ORTHO05D003442 1.6e-10 69.7 37 75.7
Nitab4.5_0009788g0020 Nicotiana tabacum HOM05D001890 ORTHO05D003442 1.6e-10 69.7 37 75.7
VMungo0720G1360 Vigna mungo HOM05D001890 ORTHO05D003442 1.6e-10 69.7 36 75.0
CANSAT54G2662 Cannabis sativa HOM05D001890 ORTHO05D003442 2.0e-10 69.3 37 73.0
CANSAT64G0653 Cannabis sativa HOM05D001890 ORTHO05D003442 2.0e-10 69.3 37 73.0
Ca_09069_v3 Cicer arietinum L. HOM05D001890 ORTHO05D003442 2.0e-10 69.3 37 75.7
Manes.09G043100 Manihot esculenta HOM05D001890 ORTHO05D003442 2.0e-10 69.3 41 73.2
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 70.3
FvH4_6g20770 Fragaria vesca HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 73.0
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 73.0
FAN14G1848 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 73.0
MD14G1042900 Malus domestica HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 75.7
Nn2g14393 Nelumbo nucifera HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 73.0
RcHm_v2.0_Chr3g0476671 Rosa chinensis HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 73.0
Sed0008069 Sechium edule HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 70.3
vmacro09092 Vaccinium macrocarpon HOM05D001890 ORTHO05D003442 2.7e-10 68.9 37 73.0
MBI11_g01309_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D003442 3.5e-10 68.6 37 75.7
Actinidia06190 Actinidia chinensis HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 75.7
Actinidia07949 Actinidia chinensis HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 75.7
Glyma.10G083700 Glycine max HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 73.0
MD12G1043900 Malus domestica HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 75.7
Rhsim02G0181100 Rhododendron simsii HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 70.3
Solyc10g081770.3 Solanum lycopersicum HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 73.0
Sopen10g032280 Solanum pennellii HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 73.0
PGSC0003DMG400028231 Solanum tuberosum HOM05D001890 ORTHO05D003442 4.6e-10 68.2 37 73.0
Atru.chr8.1303 Acer truncatum HOM05D001890 ORTHO05D003442 6.0e-10 67.8 36 75.0
Aqoxy2G00642 Aquilegia oxysepala HOM05D001890 ORTHO05D003442 6.0e-10 67.8 37 73.0
HanXRQChr02g0053331 Helianthus annuus HOM05D001890 ORTHO05D003442 6.0e-10 67.8 37 73.0
HanXRQChr13g0398661 Helianthus annuus HOM05D001890 ORTHO05D003442 6.0e-10 67.8 37 73.0
TAR369G0675 Trochodendron aralioides HOM05D001890 ORTHO05D003442 6.0e-10 67.8 36 75.0
CAN.G674.15 Capsicum annuum HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 70.3
DCAR_013449 Daucus carota HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 64.9
ECA233G4742 Erigeron canadensis HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 73.0
Migut.L01851 Erythranthe guttata HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 73.0
Nn6g34599 Nelumbo nucifera HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 70.3
Nitab4.5_0001918g0040 Nicotiana tabacum HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 70.3
Potri.006G201000 Populus trichocarpa HOM05D001890 ORTHO05D003442 7.8e-10 67.4 36 77.8
SGA_v2.0_scaffold392G50676 Striga asiatica HOM05D001890 ORTHO05D003442 7.8e-10 67.4 37 70.3
CsaV3_3G038170 Cucumis sativus L. HOM05D001890 ORTHO05D003442 1.0e-09 67.0 33 75.8
Nitab4.5_0000721g0220 Nicotiana tabacum HOM05D001890 ORTHO05D003442 1.0e-09 67.0 37 70.3
Hund10836 Selenicereus undatus HOM05D001890 ORTHO05D003442 1.0e-09 67.0 37 70.3
GSVIVG01022534001 Vitis vinifera HOM05D001890 ORTHO05D003442 1.0e-09 67.0 37 67.6
Phvul.007G266400 Phaseolus vulgaris HOM05D001890 ORTHO05D003442 1.3e-09 66.6 37 70.3
PGR004G2025 Punica granatum HOM05D001890 ORTHO05D003442 1.3e-09 66.6 36 72.2
Sabra06G0154700 Salix brachista HOM05D001890 ORTHO05D003442 1.3e-09 66.6 51 58.8
EL10Ac5g11825 Beta vulgaris HOM05D001890 ORTHO05D003442 1.7e-09 66.2 37 70.3
ClCG10G018130 Citrullus lanatus HOM05D001890 ORTHO05D003442 1.7e-09 66.2 37 64.9
Ciclev10011250m.g Citrus clementina HOM05D001890 ORTHO05D003442 2.3e-09 65.9 37 70.3
Lsat_1_v5_gn_6_34701 Lactuca sativa HOM05D001890 ORTHO05D003442 2.3e-09 65.9 37 70.3
Sabra16G0068300 Salix brachista HOM05D001890 ORTHO05D003442 2.3e-09 65.9 43 62.8
Peaxi162Scf00203g00101 Petunia axillaris HOM05D001890 ORTHO05D003442 3.0e-09 65.5 37 64.9
Potri.016G067000 Populus trichocarpa HOM05D001890 ORTHO05D003442 3.0e-09 65.5 36 72.2
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 5.0e-09 64.7 33 75.8
AUR62030696 Chenopodium quinoa HOM05D001890 ORTHO05D003442 5.0e-09 64.7 36 69.4
AUR62036337 Chenopodium quinoa HOM05D001890 ORTHO05D003442 5.0e-09 64.7 36 69.4
Prupe.7G091200 Prunus persica HOM05D001890 ORTHO05D003442 5.0e-09 64.7 36 75.0
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 5.0e-09 64.7 37 67.6
Manes.08G036000 Manihot esculenta HOM05D001890 ORTHO05D003442 6.6e-09 64.3 36 72.2
Os11g0568700 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D003442 8.6e-09 63.9 37 67.6
PSO339G5959 Papaver somniferum HOM05D001890 ORTHO05D003442 8.6e-09 63.9 37 64.9
PSO384G4950 Papaver somniferum HOM05D001890 ORTHO05D003442 8.6e-09 63.9 37 64.9
Sed0025654 Sechium edule HOM05D001890 ORTHO05D003442 8.6e-09 63.9 37 64.9
HanXRQChr05g0138051 Helianthus annuus HOM05D001890 ORTHO05D003442 1.5e-08 63.2 40 65.0
PSO063G3472 Papaver somniferum HOM05D001890 ORTHO05D003442 1.5e-08 63.2 37 62.2
Sc07g0006350 Simmondsia chinensis HOM05D001890 ORTHO05D003442 1.5e-08 63.2 37 67.6
TWI77G0744 Tripterygium wilfordii HOM05D001890 ORTHO05D003442 1.5e-08 63.2 36 69.4
CARHR086270 Cardamine hirsuta HOM05D001890 ORTHO05D003442 2.5e-08 62.4 36 72.2
Lj5g0000561 Lotus japonicus HOM05D001890 ORTHO05D003442 2.5e-08 62.4 37 64.9
THA.LOC104816629 Tarenaya hassleriana HOM05D001890 ORTHO05D003442 3.3e-08 62.0 36 72.2
CARHR206750 Cardamine hirsuta HOM05D001890 ORTHO05D003442 5.6e-08 61.2 36 72.2
PSO063G7439 Papaver somniferum HOM05D001890 ORTHO05D003442 5.6e-08 61.2 37 62.2
Aa31LG3G5200 Aethionema arabicum HOM05D001890 ORTHO05D003442 7.3e-08 60.8 36 66.7
Aa31sc52G260 Aethionema arabicum HOM05D001890 ORTHO05D003442 9.5e-08 60.5 38 65.8
AT5G06440 Arabidopsis thaliana HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 74.3
BcaB04g18657 Brassica carinata HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
BcaB06g25587 Brassica carinata HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
BcaC05g29335 Brassica carinata HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
A03p37250 Brassica napus HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
A05p37600 Brassica napus HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
C05p56160 Brassica napus HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
BolC5t34281H Brassica oleracea HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
BraA03t12885Z Brassica rapa HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
BraA05t22558Z Brassica rapa HOM05D001890 ORTHO05D003442 9.5e-08 60.5 35 71.4
CDE04G0663 Ceratophyllum demersum HOM05D001890 ORTHO05D003442 9.5e-08 60.5 36 66.7
ATR0697G280 Amborella trichopoda HOM05D001890 ORTHO05D003442 1.2e-07 60.1 36 61.1
PSO339G0680 Papaver somniferum HOM05D001890 ORTHO05D003442 1.2e-07 60.1 37 62.2
THA.LOC104826799 Tarenaya hassleriana HOM05D001890 ORTHO05D003442 1.2e-07 60.1 36 69.4
unitig_746.g26781 Utricularia gibba HOM05D001890 ORTHO05D003442 1.2e-07 60.1 35 68.6
C03p45110 Brassica napus HOM05D001890 ORTHO05D003442 1.6e-07 59.7 35 71.4
BolC3t16775H Brassica oleracea HOM05D001890 ORTHO05D003442 1.6e-07 59.7 35 71.4
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 2.1e-07 59.3 36 66.7
PSO384G4065 Papaver somniferum HOM05D001890 ORTHO05D003442 2.1e-07 59.3 37 59.5
AL6G16530 Arabidopsis lyrata HOM05D001890 ORTHO05D003442 2.8e-07 58.9 35 71.4
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 2.8e-07 58.9 36 66.7
BcaC01g04089 Brassica carinata HOM05D001890 ORTHO05D003442 2.8e-07 58.9 35 68.6
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 2.8e-07 58.9 36 66.7
Thhalv10020420m.g Eutrema salsugineum HOM05D001890 ORTHO05D003442 2.8e-07 58.9 35 68.6
A03p02730 Brassica napus HOM05D001890 ORTHO05D003442 3.6e-07 58.5 36 66.7
Carub.0006s0532 Capsella rubella HOM05D001890 ORTHO05D003442 4.7e-07 58.2 35 68.6
Sed0014759 Sechium edule HOM05D001890 ORTHO05D003442 4.7e-07 58.2 27 81.5
Sp6g36420 Schrenkiella parvula HOM05D001890 ORTHO05D003442 6.2e-07 57.8 36 66.7
HPP92_005860 Vanilla planifolia HOM05D001890 ORTHO05D003442 6.2e-07 57.8 37 59.5
Thhalv10013326m.g Eutrema salsugineum HOM05D001890 ORTHO05D003442 8.0e-07 57.4 36 63.9
PSO339G3824 Papaver somniferum HOM05D001890 ORTHO05D003442 8.0e-07 57.4 37 56.8
Sp3g09950 Schrenkiella parvula HOM05D001890 ORTHO05D003442 1.1e-06 57.0 35 68.6
BcaC06g32374 Brassica carinata HOM05D001890 ORTHO05D003442 1.4e-06 56.6 36 63.9
C09p70360 Brassica napus HOM05D001890 ORTHO05D003442 1.4e-06 56.6 36 63.9
BolC9t59781H Brassica oleracea HOM05D001890 ORTHO05D003442 1.4e-06 56.6 36 63.9
BcaC06g32575 Brassica carinata HOM05D001890 ORTHO05D003442 2.3e-06 55.8 35 65.7
A10p29950 Brassica napus HOM05D001890 ORTHO05D003442 4.0e-06 55.1 35 62.9
BraA10t45034Z Brassica rapa HOM05D001890 ORTHO05D003442 4.0e-06 55.1 35 62.9
Psat6g097960 Pisum sativum HOM05D001890 ORTHO05D003442 5.2e-06 54.7 26 84.6
AL3G23280 Arabidopsis lyrata HOM05D001890 ORTHO05D003442 8.9e-06 53.9 36 61.1


User provided reference genes

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